View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20416_low_6 (Length: 270)
Name: NF20416_low_6
Description: NF20416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20416_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 5939818 - 5940075
Alignment:
| Q |
14 |
atatttacctttaagggcagtggtgaaagaatatgttgaagggtcaatttcatctgcaacaaaattgttgaatttgagatgtaaaagaagttaaaaacca |
113 |
Q |
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| T |
5939818 |
atatttacctttaagggcagtggtgaaagaatatgttgaagggtcaatttcatctgcaaaaaaattgttgaatttgagatgtaaaagaagttaaaaacca |
5939917 |
T |
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| Q |
114 |
tgaa-ttcatgtgaattaaaatggnnnnnnngtaatgtacctttaaaagggtatccaggagaagaagcagtactagaaatggttatatttgatctttgag |
212 |
Q |
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| T |
5939918 |
tgaaattcatgtgaattaaaatggaaaaaaagtaatgtacctttaaaagggtatccaggagaagaagcagtactagaaatggttatatttgatctttgag |
5940017 |
T |
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| Q |
213 |
accttgtatcttctctaaagcttctcatataagaacctgaataccttctagaattgtt |
270 |
Q |
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| T |
5940018 |
accttgtatcttctctaaagcttctcatataagaacctgaataccttctagaattgtt |
5940075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 230
Target Start/End: Complemental strand, 6893533 - 6893448
Alignment:
| Q |
145 |
taatgtacctttaaaagggtatccaggagaagaagcagtactagaaatggttatatttgatctttgagaccttgtatcttctctaa |
230 |
Q |
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| T |
6893533 |
taatgtaccttttaatgtatatccaggagaagaagcagtgctagaaatggttatatttgatctaaaagactttgaatcttctctaa |
6893448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 6893691 - 6893638
Alignment:
| Q |
19 |
tacctttaagggcagtggtgaaagaatatgttgaagggtcaatttcatctgcaa |
72 |
Q |
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| T |
6893691 |
tacctttaagagcagtagtaaaagaataggttgaagggtcaatttcatctgcaa |
6893638 |
T |
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