View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20416_low_7 (Length: 266)

Name: NF20416_low_7
Description: NF20416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20416_low_7
NF20416_low_7
[»] chr2 (22 HSPs)
chr2 (13-250)||(15019943-15020180)
chr2 (13-240)||(15003756-15003983)
chr2 (13-250)||(15013448-15013685)
chr2 (13-250)||(31969368-31969605)
chr2 (16-248)||(15008043-15008275)
chr2 (13-247)||(14520362-14520593)
chr2 (29-250)||(14547342-14547563)
chr2 (29-250)||(15023978-15024199)
chr2 (16-227)||(14552575-14552786)
chr2 (16-207)||(14529018-14529209)
chr2 (16-207)||(14543244-14543435)
chr2 (21-250)||(14534200-14534429)
chr2 (19-207)||(14512568-14512756)
chr2 (19-250)||(14567591-14567822)
chr2 (13-250)||(14850212-14850449)
chr2 (16-226)||(14525138-14525348)
chr2 (28-250)||(14847522-14847739)
chr2 (24-67)||(14485650-14485693)
chr2 (29-77)||(14168641-14168689)
chr2 (21-69)||(14480917-14480965)
chr2 (23-69)||(14495102-14495148)
chr2 (23-69)||(14502589-14502635)
[»] chr4 (1 HSPs)
chr4 (27-69)||(49553785-49553827)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 15020180 - 15019943
Alignment:
Q  13 atactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||  |||||||||||||||    
T  15020180 atactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacccaacaattgcttggtcatcaaagc 15020081  T
Q  113 agtcccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcga 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15020080 agtcccaaaagcggtcgttgaaggtttaaaccctaaacccttaatttcctccaataacttaatcatatcatttgaaccaaatatagatggccttgttcga 15019981  T
Q  213 agcaatctagcaatggtagaatcagaaaatccaaaatc 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15019980 agcaatctagcaatggtagaatcagaaaatccaaaatc 15019943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 15003756 - 15003983
Alignment:
Q  13 atactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||  |||||||||||||||    
T  15003756 atactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtattttactcatacattgcttggtcatcaaagc 15003855  T
Q  113 agtcccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcga 212  Q
    ||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||||| |||||| ||| |||||||||||||||||||||||| || ||    
T  15003856 agtcccaaaagtggtcgttgaagcgtcaaaccctaaacacttaacttcctccaatgacataatcaaatcctttgaaccaaatatagatggccttttttga 15003955  T
Q  213 agcaatctagcaatggtagaatcagaaa 240  Q
    ||||||||||||||||||||||||||||    
T  15003956 agcaatctagcaatggtagaatcagaaa 15003983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 15013685 - 15013448
Alignment:
Q  13 atactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttat-caatatcttggtcatcaaag 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||| |||||    
T  15013685 atactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttactcatacaatg-cttggtcaccaaag 15013587  T
Q  112 cagtcccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcg 211  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||||||||| | ||||||||  ||| |||||    
T  15013586 cagtcccaaaagcggccgttgaagggtcaaaccctaaacccttaacgtcctccaatgacttaatcaaatcatttgaacaatatatagatttcctagttcg 15013487  T
Q  212 aagcaatctagcaatggtagaatcagaaaatccaaaatc 250  Q
    ||||||||||||||||| ||||||| ||| |||||||||    
T  15013486 aagcaatctagcaatggcagaatcacaaactccaaaatc 15013448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 31969605 - 31969368
Alignment:
Q  13 atactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||  |||||||| ||||||    
T  31969605 atactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttactcatacattgcttggtcaccaaagc 31969506  T
Q  113 agtcccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcga 212  Q
    ||||||||| ||| |||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||||||||| | ||||||||  ||| ||||||    
T  31969505 agtcccaaatgcgatcgttgaagggtcaaaccctaaacccttaacgtcctccaatgacttaatcaaatcatttgaacaagatatagatttcctagttcga 31969406  T
Q  213 agcaatctagcaatggtagaatcagaaaatccaaaatc 250  Q
    |||||||||||||||| ||||||| ||| |||||||||    
T  31969405 agcaatctagcaatggcagaatcataaactccaaaatc 31969368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 15008275 - 15008043
Alignment:
Q  16 ctcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| | |||||||    | ||||||   ||||||||||    
T  15008275 ctcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttacttaaacctttcttggctgtcaaagcagt 15008176  T
Q  116 cccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcgaagc 215  Q
    ||||||||  || |||||||| | ||||||||||| ||||| |||||| ||||||||||||| |||| ||||||||||||||||||||||| |  |||||    
T  15008175 cccaaaagtagttgttgaaggatgaaaccctaaacgcttaacttcctctaatgacttaatcaaatcagttgaaccaaatatagatggccttttctgaagc 15008076  T
Q  216 aatctagcaatggtagaatcagaaaatccaaaa 248  Q
    ||| ||||||||||||||||||||| |||||||    
T  15008075 aatttagcaatggtagaatcagaaactccaaaa 15008043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 14520593 - 14520362
Alignment:
Q  13 atactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagc 112  Q
    ||||||| || ||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||||| | |||||     || ||||||  ||||||||    
T  14520593 atactcggatgacaacttcatcagaccagccccatttcttaaagacatcaactttctcatcccaaagttttttactac---atttcttggctatcaaagc 14520497  T
Q  113 agtcccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcga 212  Q
    || ||||||||  ||| ||||||| | ||||||||||| ||||| |||||| ||||||||||||| |||| |||||||||||||||||| ||||||| ||    
T  14520496 agccccaaaagtagtctttgaaggatgaaaccctaaacacttaacttcctctaatgacttaatcaaatcagttgaaccaaatatagatgaccttgtttga 14520397  T
Q  213 agcaatctagcaatggtagaatcagaaaatccaaa 247  Q
    ||||||||||||||| |||||||||||| ||||||    
T  14520396 agcaatctagcaatgttagaatcagaaactccaaa 14520362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 14547563 - 14547342
Alignment:
Q  29 ttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagtcccaaaagcggtc 128  Q
    ||||||||||||||||||||||||||||||| | ||||||| ||||||  || | ||||| ||  || ||||||  | |||||||| ||||||||  | |    
T  14547563 ttcatcagaccaaccccatttcttaaagacggcgactttctcatcccatcgtgttttactcatacatttcttggcgaacaaagcagccccaaaagtagcc 14547464  T
Q  129 gttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcgaagcaatctagcaatgg 228  Q
    |||||||| | ||||||||||| ||||| |||||||||||||||||||| |||| | ||||||||||||||||||||| || ||||||| |||||||||     
T  14547463 gttgaaggatcaaaccctaaacacttaacttcctccaatgacttaatcaaatcagtcgaaccaaatatagatggccttttttgaagcaagctagcaatga 14547364  T
Q  229 tagaatcagaaaatccaaaatc 250  Q
     ||||||||||| |||||||||    
T  14547363 cagaatcagaaactccaaaatc 14547342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 15024199 - 15023978
Alignment:
Q  29 ttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagtcccaaaagcggtc 128  Q
    ||||||||||||||||||||||||||||  ||||||||||| |||||||||| | ||||| ||   | ||||||  | |||||||  ||||||||  |      
T  15024199 ttcatcagaccaaccccatttcttaaaggtgtcaactttctcatcccaaagttttttactcatacctttcttggctaccaaagcaaccccaaaagaagct 15024100  T
Q  129 gttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcgaagcaatctagcaatgg 228  Q
    |||||||| | ||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||| |  || |||||||||||||||||     
T  15024099 gttgaaggatcaaaccctaaactcttaacttcctccaatgacttaatcaaatcctttgaaccaaatatagatggcttattttgaagcaatctagcaatga 15024000  T
Q  229 tagaatcagaaaatccaaaatc 250  Q
     ||||||||||| |||||||||    
T  15023999 cagaatcagaaactccaaaatc 15023978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 14552786 - 14552575
Alignment:
Q  16 ctcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||| ||   | ||||||  ||||||||||     
T  14552786 ctcgaataacatcttcatcagaccaaccccatttcttaaagacatcaactttctcatcccaaagttttttactcatacctttcttggctatcaaagcagc 14552687  T
Q  116 cccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcgaagc 215  Q
    ||||||||  ||  |||  || | |||||||||||| |||| |||||||||||||||||||| ||| ||||||| ||||||||||||  |  || |||||    
T  14552686 cccaaaagtagtgattgggggatgaaaccctaaacctttaacttcctccaatgacttaatcaaatcctttgaacaaaatatagatggtttaatttgaagc 14552587  T
Q  216 aatctagcaatg 227  Q
    ||||||||||||    
T  14552586 aatctagcaatg 14552575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 14529209 - 14529018
Alignment:
Q  16 ctcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagt 115  Q
    ||||||||| | | |||||||||||||||||||||||||||   |||| ||||| |||||||||| | ||||| ||  || |||||| ||||||||||||    
T  14529209 ctcgaataatagcctcatcagaccaaccccatttcttaaaggtatcaattttctcatcccaaagttttttactcatacatttcttggccatcaaagcagt 14529110  T
Q  116 cccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttg 207  Q
    |||||||   ||| ||||||| | |||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  14529109 cccaaaattagtcattgaaggatgaaaccctaaatccttaacttcctccaatgacttaatcaaatcctttgaaccaaatatagacggccttg 14529018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 14543435 - 14543244
Alignment:
Q  16 ctcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagt 115  Q
    ||||||||| | | |||||||||||||||||||||||||||   |||| ||||| |||||||||| | ||||| ||  || |||||| ||||||||||||    
T  14543435 ctcgaataatagcctcatcagaccaaccccatttcttaaaggtatcaattttctcatcccaaagttttttactcatacatttcttggccatcaaagcagt 14543336  T
Q  116 cccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttg 207  Q
    |||||||   ||| ||||||| | |||||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  14543335 cccaaaattagtcattgaaggatgaaaccctaaatccttaacttcctccaatgacttaatcaaatcctttgaaccaaatatagacggccttg 14543244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 14534429 - 14534200
Alignment:
Q  21 ataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagtcccaa 120  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| | |||||  |  |  | ||||  | |||||||  |||||    
T  14534429 ataacatcttcatcagaccaaccccatttcttcaagacatcaactttctcatcccaaagttttttactcgtacagttattggctaacaaagcatacccaa 14534330  T
Q  121 aagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcgaagcaatct 220  Q
    |||  ||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||| ||||||| || || | |||| || | ||||| ||||||    
T  14534329 aagtagtcgttgaaggatcaaaccctaaacccttaatttcctccaatgaattaatcaaatcctttgaacaaattaaaaatggtctagatcgaatcaatct 14534230  T
Q  221 agcaatggtagaatcagaaaatccaaaatc 250  Q
    |||||||  ||||| || || |||||||||    
T  14534229 agcaatgacagaatgaggaattccaaaatc 14534200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 14512756 - 14512568
Alignment:
Q  19 gaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagtccc 118  Q
    |||||||| ||||| |||||||||||| |||||||||||| ||||||||||||||||||||| | ||| | ||   | ||||||  |||||||||| ||     
T  14512756 gaataacagcttcaccagaccaaccccgtttcttaaagacatcaactttcttatcccaaagttttttagtcatacctttcttggctatcaaagcagccct 14512657  T
Q  119 aaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttg 207  Q
    |||||  |||  |||||| | |||||||||| |||||| |||||| ||||||||||||| ||| ||||||||||||||||| |||||||    
T  14512656 aaaagtagtcaatgaaggatgaaaccctaaatccttaacttcctctaatgacttaatcaaatcctttgaaccaaatatagacggccttg 14512568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 14567822 - 14567591
Alignment:
Q  19 gaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagtccc 118  Q
    |||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||||| || | || || ||  || ||||||    |||||||  |||    
T  14567822 gaataacagcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaacgtttttttctcatacatttcttggctgccaaagcaacccc 14567723  T
Q  119 aaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcgaagcaat 218  Q
    |||||  |  |||||||| | ||||||||||| ||||| ||||||||||||||||||||  || |||||||||| ||||||||||||||   |||||||     
T  14567722 aaaagaagctgttgaaggatcaaaccctaaactcttaacttcctccaatgacttaatcaattcctttgaaccaactatagatggccttgactgaagcaaa 14567623  T
Q  219 ctagcaatggtagaatcagaaaatccaaaatc 250  Q
    |||||||||  |  |||||||| |||||||||    
T  14567622 ctagcaatgacattatcagaaactccaaaatc 14567591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 14850212 - 14850449
Alignment:
Q  13 atactcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| | ||||| |    | |||| |     |||||    
T  14850212 atactcgaataacatcttcatcagaccaaccccatttcttaaaggcatcaactttctcatcccaaagttttttactcaaacctttctttgctgctaaagc 14850311  T
Q  113 agtcccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcga 212  Q
    | | ||||||    || ||||||| | ||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||| |||||||| ||   ||    
T  14850312 aattccaaaactattctttgaaggatcaaaccctaaacacttaacttcctccaatgacttaatcaaatcctttgaaccaaatacagatggccatgactga 14850411  T
Q  213 agcaatctagcaatggtagaatcagaaaatccaaaatc 250  Q
    ||||  |||||||||  |  |||||||| |||||||||    
T  14850412 agcatactagcaatgacattatcagaaactccaaaatc 14850449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 14525348 - 14525138
Alignment:
Q  16 ctcgaataacatcttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagt 115  Q
    ||||||||||||||||||||| |||||||||||||||||| || |||||||||| |||||||||| | ||||| ||  || |||| |  | |||||| |     
T  14525348 ctcgaataacatcttcatcagtccaaccccatttcttaaaaacatcaactttctcatcccaaagtgttttactcatacatttctttgcaaccaaagctgc 14525249  T
Q  116 cccaaaagcggtcgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcgaagc 215  Q
    ||||||||  |  |||||| ||| ||||||||||||||||| ||||||||| |   |||| | |||| |||| |||| ||||| ||| |||||   ||||    
T  14525248 cccaaaagttgaagttgaaaggtgaaaccctaaacccttaacttcctccaaagtactaatgaaatcaattgatccaagtatagctggtcttgtcaaaagc 14525149  T
Q  216 aatctagcaat 226  Q
    |||||||||||    
T  14525148 aatctagcaat 14525138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 14847522 - 14847739
Alignment:
Q  28 cttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaaagtatgttacttatcaatatcttggtcatcaaagcagtcccaaaagcggt 127  Q
    |||||||||||||||||| ||||| |||||| ||||||| || ||||||| || | |||||  |  || ||||||  ||||| | || ||| ||||  ||    
T  14847522 cttcatcagaccaaccccgtttctcaaagacatcaactt-ctcatcccaacgtgttttactcctacatttcttggctatcaaggaagccccgaaagtagt 14847620  T
Q  128 cgttgaagggttaaaccctaaacccttaatttcctccaatgacttaatcatatcatttgaaccaaatatagatggccttgttcgaagcaatctagcaatg 227  Q
    | ||||||| | ||| |||||||| ||||   |||||| ||||||||||| | || ||  |||||||||||||| |||| || ||||||||||| |||||    
T  14847621 cattgaaggatcaaaacctaaaccgttaa---cctcca-tgacttaatcaaaccagtttgaccaaatatagatgaccttttttgaagcaatctatcaatg 14847716  T
Q  228 gtagaatcagaaaatccaaaatc 250  Q
    ||||||||  ||| |||||||||    
T  14847717 gtagaatcgcaaactccaaaatc 14847739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 14485693 - 14485650
Alignment:
Q  24 acatcttcatcagaccaaccccatttcttaaagacgtcaacttt 67  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  14485693 acatcttcatcagaccatccccatttcttaaagacatcaacttt 14485650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 14168641 - 14168689
Alignment:
Q  29 ttcatcagaccaaccccatttcttaaagacgtcaactttcttatcccaa 77  Q
    ||||||||||||||||||||||||||||||  ||||||||  |||||||    
T  14168641 ttcatcagaccaaccccatttcttaaagacaacaactttcgcatcccaa 14168689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 14480917 - 14480965
Alignment:
Q  21 ataacatcttcatcagaccaaccccatttcttaaagacgtcaactttct 69  Q
    |||| ||||||||||||||||||||| ||||||||| | ||||||||||    
T  14480917 ataatatcttcatcagaccaaccccacttcttaaaggcatcaactttct 14480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 14495148 - 14495102
Alignment:
Q  23 aacatcttcatcagaccaaccccatttcttaaagacgtcaactttct 69  Q
    |||||||||||| ||||||||||||||||| ||| | ||||||||||    
T  14495148 aacatcttcatccgaccaaccccatttcttcaaggcatcaactttct 14495102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 14502635 - 14502589
Alignment:
Q  23 aacatcttcatcagaccaaccccatttcttaaagacgtcaactttct 69  Q
    |||||||||||| ||||||||||| ||||||||| | ||||||||||    
T  14502635 aacatcttcatccgaccaaccccacttcttaaaggcatcaactttct 14502589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 49553827 - 49553785
Alignment:
Q  27 tcttcatcagaccaaccccatttcttaaagacgtcaactttct 69  Q
    ||||||||||||||||||||||||||||| |  ||||||||||    
T  49553827 tcttcatcagaccaaccccatttcttaaaaatttcaactttct 49553785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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