View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20417_low_1 (Length: 810)
Name: NF20417_low_1
Description: NF20417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20417_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 774; Significance: 0; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 1 - 794
Target Start/End: Original strand, 36327412 - 36328205
Alignment:
| Q |
1 |
gaatcgttgtcttcatggatataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36327412 |
gaatcgttgtcttcatggatataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcac |
36327511 |
T |
|
| Q |
101 |
taatgtcaagagagtcaagaagagggcagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccagg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36327512 |
taatgtcaagagactcaagaagagggcagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccagg |
36327611 |
T |
|
| Q |
201 |
catcgtttcagcaataacaaacgccattttatcagagtcacaagattcatgcgaccatgaacaatatttaagggatttcaaaagagggcaataacgacct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36327612 |
catcgtttcagcaataacaaacgccattttatcagagtcacaagattcatgcgaccatgaacaatatttaagggatttcaaaagagggcaataacgacct |
36327711 |
T |
|
| Q |
301 |
agggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgtaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36327712 |
agggctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgtaa |
36327811 |
T |
|
| Q |
401 |
tcttggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaatttgcttcatcaaaaaatacaat |
500 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36327812 |
tcttcgagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaatttgcttcatcaaaaaatacaat |
36327911 |
T |
|
| Q |
501 |
tgaatgcaagaataaaataagatattggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgag |
600 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36327912 |
tgaatgcaagaataaaataagattttggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgag |
36328011 |
T |
|
| Q |
601 |
atgactgctacttcttttgacagcattgcaacatatctttgccaaatccacgtaagcactgggtgaattacgtgtgcagcgcatacgaatagttcgccac |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36328012 |
atgactgctacttcttttgacagcattgcaacatatctttgccaaatccacataagcactgggtgaattacgtgtgcagcgcatacgaatagttcgccac |
36328111 |
T |
|
| Q |
701 |
atgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg |
794 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36328112 |
atgacaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg |
36328205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 46 - 794
Target Start/End: Original strand, 36333281 - 36334044
Alignment:
| Q |
46 |
ttgatctggtcaatgcacctttt-cttcaaatcttcagtcaaataatgacaatcactaatgtcaagagagtcaagaagagggcagctatcaataatggca |
144 |
Q |
| |
|
||||| || |||||||||||||| || |||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
36333281 |
ttgatttgatcaatgcacctttttctccaaatcttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcctttatcaataatggcg |
36333380 |
T |
|
| Q |
145 |
agcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgtttcagcaataacaaacgccattttatcagagtcacaag |
244 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |
|
|
| T |
36333381 |
agcacaccaagttgagtgagcttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaagcgccattttatcagagtcgcaag |
36333480 |
T |
|
| Q |
245 |
att------catgcgaccatgaacaatatttaagggatttcaaaagagggcaataacgacctagggctttaagagaaacatcggttaggtggcaatgtga |
338 |
Q |
| |
|
||| | | |||| | ||||||||| ||||||||||| ||||| | ||||| || ||| ||||| ||||||||||| ||||| ||| |
|
|
| T |
36333481 |
attgcgtagagtaccaccacacatgatatttaagcaatttcaaaagatggcaagatcgaccaagaacttcaagag--acatcggttagacagcaatatga |
36333578 |
T |
|
| Q |
339 |
aatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatgcaaagtaggtga |
438 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||||||| | |||||||| |||||||||| | ||||||||||||| ||||||| |||| ||| |
|
|
| T |
36333579 |
aatgtccactttctccaactgtggaagctttctcatggctttaccaaatcctttatctgtaatcaaacaacaatttacaagccgcatgcaacgtagctga |
36333678 |
T |
|
| Q |
439 |
ctgccactgtaaaatttatattaaaaagaagtattaaaatttgcttcatcaaa----------aaatacaattgaatgcaagaataaaataagatattgg |
528 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||| | ||||||| ||| | ||||| ||||||||| ||||||| |||||| |||| |
|
|
| T |
36333679 |
ctgccactgcaaaatttgaattaaaaagaactattaacaaatgcttcaaaaaaacagtaatatatatacagttgaatgcaggaataaattaagattttgg |
36333778 |
T |
|
| Q |
529 |
tattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgagatgactgctacttcttttgacagcattg |
628 |
Q |
| |
|
||||||||||| ||||||||| | || ||||||||| | |||||||||||| ||||| |||||||| ||||||| | |||| || | |||| || |
|
|
| T |
36333779 |
tattaattactgatcagctatgcatttaaggagatcatcgatgcaaaaacgcttaatatcaatgtcttcaagatgaccacaacttagttcaaaagcaatg |
36333878 |
T |
|
| Q |
629 |
caacatatctttgccaaatccacgtaagcactgggtgaattacgtgtgcagcgcatacgaatagttcgccacatgagaggatccttgcaaacgttccacc |
728 |
Q |
| |
|
||||| ||||| ||||||||| |||||| |||||| |||| || ||| ||| |||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
36333879 |
caacaaatcttccacaaatccacataagcatagggtgatatacggatgtagcacatgcgaatagtgcgccacatgagaggatccttgcaaatgttccacc |
36333978 |
T |
|
| Q |
729 |
attgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg |
794 |
Q |
| |
|
|||| || |||||||||| |||||| ||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
36333979 |
attgtggacacactcggcaagcactcgtcacaatttccaacgtaccaagcctctgaaggatgtttg |
36334044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 6 - 477
Target Start/End: Original strand, 36313175 - 36313646
Alignment:
| Q |
6 |
gttgtcttcatggatataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcactaatg |
105 |
Q |
| |
|
||||| ||||||| |||||||| ||||| |||||||| || ||||| |||||||| ||||||| |||| ||||| |||||||||||||||||| |||| |
|
|
| T |
36313175 |
gttgttttcatggttataacgaactggcatgtgcaaatcattaatctgatcaatgcagcttttctccaaaccttcattcaaataatgacaatcacgaatg |
36313274 |
T |
|
| Q |
106 |
tcaagagagtcaagaagagggcagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcg |
205 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
36313275 |
tcaagagactcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattg |
36313374 |
T |
|
| Q |
206 |
tttcagcaataacaaacgccattttatcagagtcacaagat-tcatgcgaccatgaacaatatttaagggatttcaaaagagggcaataacgacctaggg |
304 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| | | | || |||| ||||||| ||||||||||||||||| | ||||| |||| |
|
|
| T |
36313375 |
tttcagcaataacaagtgccgttttatcagagtcacaagatgtaaaccttgaatttacaa-atttaagcgatttcaaaagagggcatgatcgaccaaggg |
36313473 |
T |
|
| Q |
305 |
ctttaagagaaacatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgtaatctt |
404 |
Q |
| |
|
||| |||||| ||||| ||||||| | ||||||||| ||| ||||||||| | ||||||||||||| |||||| |||||||||||||||||||| | |
|
|
| T |
36313474 |
cttcaagagagacatcagttaggtagtgatgtgaaattacaaccttctccaaccgcggaagctttctcacagcttcactaaatccttcatctgtaatcct |
36313573 |
T |
|
| Q |
405 |
ggagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaa |
477 |
Q |
| |
|
||||||| |||||||||||||| | |||||| ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
36313574 |
cgagcaatctacaagccccatgcgacataggtgtctgccactgtaaaatttgaattaaaaagaactattaaaa |
36313646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 20 - 793
Target Start/End: Original strand, 36320587 - 36321372
Alignment:
| Q |
20 |
tataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcactaatgtcaagagagtcaag |
119 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36320587 |
tataacgatatgacagttgcaaatccttgatctggtcaatgcaccttttcgtcaaatcttcactcaaataatgacaatcactaatgtcaagagattcaag |
36320686 |
T |
|
| Q |
120 |
aagagggcagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgtttcagcaataaca |
219 |
Q |
| |
|
|| ||| || |||||||||||||| |||||||||||||| |||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
36320687 |
aacaggacatttatcaataatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagca |
36320786 |
T |
|
| Q |
220 |
aacgccattttatcagagtcacaagattcatgcg----accatgaacaatatttaagggatttcaaaagagggcaataacgacctagggctttaagagaa |
315 |
Q |
| |
|
| ||||||||| || | || ||||| || || | |||||| | ||||||||| |||||| |||||||||| | ||||| ||||||| |||||| |
|
|
| T |
36320787 |
agcgccattttctctgggttgcaaga-tcgtgtggggtaccatgcatgatatttaagcaatttcagaagagggcaagatcgaccaagggcttcaagagag |
36320885 |
T |
|
| Q |
316 |
acatcggttaggtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgtaatcttggagcaattta |
415 |
Q |
| |
|
|| || | || |||| | ||||| || || | | || | ||||||||||| | |||||| ||||||||| || ||||||| | ||| ||| |
|
|
| T |
36320886 |
acctcagatataatgcaaaatataatgttaacctcccctaaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaactta |
36320985 |
T |
|
| Q |
416 |
caagccccatgcaaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaatttgcttcatcaaaa-aata------caa---ttgaat |
505 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| |||||||| | ||||| |||| |||| ||| |||||| |
|
|
| T |
36320986 |
caagccacatgcaacgtaggtgactgccactgtaaaatttat-ttagaaagaactattaaaaaacgtttcatgaaaacaataagttatcaaaagttgaat |
36321084 |
T |
|
| Q |
506 |
gcaagaataaaataagatattggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgagatgac |
605 |
Q |
| |
|
||| ||| ||| | |||| |||||||||||||||| || |||||| | |||||| |||| |||||||| || |||||||| |||| ||| ||||||| |
|
|
| T |
36321085 |
gcaggaacaaattgagattttggtattaattacttgtcggctatgcatttgagggtatcattggtgcaataatactcaatatcaatgttttcaagatgac |
36321184 |
T |
|
| Q |
606 |
tgctacttcttttgacagcattgcaacatatctttgccaaatccacgtaagcactgggtgaattacgtgtgcagcgcatacgaatagttcgccacatgag |
705 |
Q |
| |
|
|| ||| | ||||| | |||||||||| ||||| |||||| | ||||| |||||| || | | || |||| ||||| | | ||||||||| |
|
|
| T |
36321185 |
cgcaactccgtttgataacattgcaacaaatcttcaccaaattctgaaaagcatagggtgacttcctgacgtaggacatatgaataatgcaccacatgag |
36321284 |
T |
|
| Q |
706 |
aggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgttt |
793 |
Q |
| |
|
||||||||||||| |||| ||||||| ||| | |||||||| |||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36321285 |
tggatccttgcaaatgttcaaccattgtgggcatactcggcaagcactcgtcacaatttcaaacgtaccaagcctctgaaggatgttt |
36321372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 30 - 313
Target Start/End: Original strand, 36335970 - 36336253
Alignment:
| Q |
30 |
tggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcactaatgtcaagagagtcaagaagagggcag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
36335970 |
tggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcattcaaattaagacaaaaactaatgtcaagatattcaagaagagggcat |
36336069 |
T |
|
| Q |
130 |
ctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgtttcagcaataacaaacgccattt |
229 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| ||||||| ||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
36336070 |
ttatcaataatggcgagcacgccaagttcagtgagcttgtgtcctctcatatcaagatggcatagaccaggcattgtttcagcaataagaaacgccattt |
36336169 |
T |
|
| Q |
230 |
tatcagagtcacaagattcatgcgaccatgaacaatatttaagggatttcaaaagagggcaataacgacctagggctttaagag |
313 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||| ||| | ||| ||||||||||||||||| | ||||| ||||||| ||||| |
|
|
| T |
36336170 |
tatcagagtcacaagagtcaagcgagcatgaattatactgaagccatttcaaaagagggcaagatcgaccaagggcttcaagag |
36336253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 33 - 477
Target Start/End: Original strand, 36325574 - 36326023
Alignment:
| Q |
33 |
cagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcag--tcaaataatga----caatcactaatgtcaagagagtcaagaagaggg |
126 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||| ||||| | |||||||||| ||| | ||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
36325574 |
cagttgcaaatcattgatcttgtcgatgcaacttttatgcaaatcttcatcttcatacaatgaaagacaaacactaatgtcaagagattcaagaagaggg |
36325673 |
T |
|
| Q |
127 |
cagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgtttcagcaataacaaacgcca |
226 |
Q |
| |
|
|| ||||||| ||||| ||||||| ||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
36325674 |
catttatcaattatggcgagcacacgaagttcactgagcttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaataacaaaagcca |
36325773 |
T |
|
| Q |
227 |
ttttatcagagtcacaagattcatgcgaccatgaacaatatttaagggatttcaaaagagggcaataacgacctagggctttaagagaaacatcggttag |
326 |
Q |
| |
|
|||||||||| |||| ||| || | | | | || ||||||| |||||||||||||||||| | ||||| ||||||| |||||| || || ||||| |
|
|
| T |
36325774 |
ttttatcagattcacgagaagcaaaccatcctactgaaaatttaagcgatttcaaaagagggcaagatcgaccaagggcttcaagagagacctcagttag |
36325873 |
T |
|
| Q |
327 |
gtggcaatgtgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatg |
426 |
Q |
| |
|
| ||||||||||||||| |||||| || | ||||||||||||| ||||||| ||||||||| || ||| ||| | ||||||||||||| |||| |
|
|
| T |
36325874 |
ataagaatgtgaaatgtcaaccttctctaacagcggaagctttctcaaggcttcactaaatcctttatttgtcatcccccaacaatttacaagccgcatg |
36325973 |
T |
|
| Q |
427 |
caaagtaggtgactgccactgtaaaatttatattaaaaagaagtattaaaa |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
36325974 |
caaagtaggtgactgccactgtaaaatttat-ttaaaaagaactattaaaa |
36326023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 695 - 794
Target Start/End: Original strand, 36309764 - 36309862
Alignment:
| Q |
695 |
cgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg |
794 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||||| ||| ||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
36309764 |
cgccacattagaggatccttgcaaatgttccaccattgcggacacactc-gcatgcactcgtcacaatttcaaacgcaccaagcctatgaaggatgtttg |
36309862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 696 - 793
Target Start/End: Complemental strand, 30201249 - 30201152
Alignment:
| Q |
696 |
gccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgttt |
793 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | || ||||| | |||||||| ||| |||||||| |||| |||||| ||||| |||||| |
|
|
| T |
30201249 |
gccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaagaatgttt |
30201152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 36309075 - 36309120
Alignment:
| Q |
30 |
tggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaa |
75 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
36309075 |
tggcagttgcaaatcattgatctgatcaatgcaccttttcttcaaa |
36309120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 686 - 793
Target Start/End: Original strand, 36313859 - 36313963
Alignment:
| Q |
686 |
cgaatagttcgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaa |
785 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||| ||||||| | | | || | ||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
36313859 |
cgaatagtgcgccacatgagaggatccttgcaaatcttcaaccattgagtgcatacacaacatgcactcgtcacaatttcaa---taccaagcctctgaa |
36313955 |
T |
|
| Q |
786 |
ggatgttt |
793 |
Q |
| |
|
| |||||| |
|
|
| T |
36313956 |
gaatgttt |
36313963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 30227425 - 30227316
Alignment:
| Q |
695 |
cgccacatgagaggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg |
794 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || | || ||||| | |||||||| ||| ||| || | ||||||||||| ||||| ||||||| |
|
|
| T |
30227425 |
cgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaagaatgtttg |
30227326 |
T |
|
| Q |
795 |
tgatgatgtc |
804 |
Q |
| |
|
| ||||||| |
|
|
| T |
30227325 |
ttgtgatgtc |
30227316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 605
Target Start/End: Original strand, 36326051 - 36326120
Alignment:
| Q |
536 |
tacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgagatgac |
605 |
Q |
| |
|
||||| || |||||| | |||||||||||| ||||||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
36326051 |
tacttgtcggctatgcatttgaggagatcattggtgcaaaaacgctcaatatcaatgacttcaagatgac |
36326120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 697 - 729
Target Start/End: Complemental strand, 29751926 - 29751894
Alignment:
| Q |
697 |
ccacatgagaggatccttgcaaacgttccacca |
729 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
29751926 |
ccacatgagaggatccttgcaaacgttccacca |
29751894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 695 - 729
Target Start/End: Complemental strand, 30223174 - 30223140
Alignment:
| Q |
695 |
cgccacatgagaggatccttgcaaacgttccacca |
729 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30223174 |
cgccacatgagaggatccttgcaaatgttccacca |
30223140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 605
Target Start/End: Original strand, 36313699 - 36313784
Alignment:
| Q |
520 |
agatattggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcgagatgac |
605 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| | ||||||| |||| ||||||| || |||||||| ||||||| ||||||| |
|
|
| T |
36313699 |
agattttggtattaattacttatcagctatgcatttgaggatatcatcggtgcaataatactcaatattaatgtctttaagatgac |
36313784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 336 - 461
Target Start/End: Original strand, 16053213 - 16053338
Alignment:
| Q |
336 |
tgaaatgtcaatcttctccaattgtggaagctttctcatggcttcagtaaatccttcatctgtaatcttggagcaatttacaagccccatgcaaagtagg |
435 |
Q |
| |
|
||||||| ||| |||||| || | |||||||| |||| |||||| |||||||||| |||| ||| | |||||| ||||| || |||| || ||||| |
|
|
| T |
16053213 |
tgaaatgacaagcttctctaacagcggaagcttcctcacagcttcactaaatccttcttctgaaatttcatagcaatctacaaaccgcatggaacgtagg |
16053312 |
T |
|
| Q |
436 |
tgactgccactgtaaaatttatatta |
461 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
16053313 |
tgactgccactgtaaaatttaaatta |
16053338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 706 - 794
Target Start/End: Original strand, 16053597 - 16053685
Alignment:
| Q |
706 |
aggatccttgcaaacgttccaccattgcggggacactcggcatgcactcctcagaatttcaaacgtaccaagcctctgaaggatgtttg |
794 |
Q |
| |
|
|||||||||||||| ||||||||| | ||| |||||| ||||||||| | | ||||||||| | |||||||||||||||||| |||| |
|
|
| T |
16053597 |
aggatccttgcaaatgttccaccaaagagggcacactccgcatgcacttgttaaaatttcaaatgcaccaagcctctgaaggatatttg |
16053685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 42563560 - 42563630
Alignment:
| Q |
157 |
tcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgtttcagcaataacaaacgccat |
227 |
Q |
| |
|
||||| |||| |||||| || | ||||||||||| ||||||| |||| ||||||| |||||||||||||| |
|
|
| T |
42563560 |
tcagtaagcttgtgtccattgatatcaagatggcacagaccagacatcatttcagcgataacaaacgccat |
42563630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 688 - 730
Target Start/End: Original strand, 16955661 - 16955703
Alignment:
| Q |
688 |
aatagttcgccacatgagaggatccttgcaaacgttccaccat |
730 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16955661 |
aatagtgcgccacatgagaggatccttgcaaatattccaccat |
16955703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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