View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20417_low_2 (Length: 352)

Name: NF20417_low_2
Description: NF20417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20417_low_2
NF20417_low_2
[»] chr3 (13 HSPs)
chr3 (1-337)||(10878189-10878525)
chr3 (39-211)||(11829970-11830145)
chr3 (235-333)||(10922909-10923005)
chr3 (132-209)||(15331827-15331905)
chr3 (217-333)||(13178475-13178592)
chr3 (248-320)||(4768210-4768281)
chr3 (102-174)||(13178387-13178459)
chr3 (236-321)||(16201793-16201876)
chr3 (235-333)||(10917681-10917777)
chr3 (222-270)||(20747248-20747296)
chr3 (248-333)||(11073852-11073937)
chr3 (235-336)||(14427635-14427736)
chr3 (217-270)||(3646619-3646672)
[»] chr6 (11 HSPs)
chr6 (126-333)||(17206345-17206554)
chr6 (102-333)||(34659378-34659610)
chr6 (217-318)||(19730888-19730989)
chr6 (217-320)||(27167296-27167397)
chr6 (217-333)||(21689464-21689581)
chr6 (228-333)||(20396335-20396440)
chr6 (247-318)||(4312021-4312091)
chr6 (101-174)||(19731005-19731077)
chr6 (235-321)||(20396031-20396116)
chr6 (39-86)||(240316-240364)
chr6 (290-333)||(10481559-10481603)
[»] chr8 (14 HSPs)
chr8 (101-333)||(18565381-18565615)
chr8 (102-322)||(23433442-23433661)
chr8 (138-318)||(20267757-20267937)
chr8 (138-318)||(21054386-21054566)
chr8 (217-313)||(211410-211506)
chr8 (217-313)||(240750-240846)
chr8 (217-313)||(725033-725129)
chr8 (217-313)||(794105-794201)
chr8 (217-315)||(21838343-21838441)
chr8 (217-337)||(5825278-5825398)
chr8 (107-173)||(5825816-5825881)
chr8 (255-335)||(23586710-23586790)
chr8 (247-333)||(13644681-13644768)
chr8 (247-333)||(13745106-13745193)
[»] chr5 (14 HSPs)
chr5 (143-333)||(22747820-22748011)
chr5 (235-318)||(24885850-24885931)
chr5 (102-206)||(19570129-19570233)
chr5 (228-299)||(12046681-12046752)
chr5 (247-321)||(9823702-9823776)
chr5 (236-322)||(28759885-28759970)
chr5 (217-333)||(24163080-24163196)
chr5 (43-174)||(18303908-18304037)
chr5 (235-333)||(24495125-24495222)
chr5 (248-318)||(19570247-19570317)
chr5 (246-319)||(12063247-12063320)
chr5 (237-333)||(22797701-22797798)
chr5 (255-336)||(22820779-22820860)
chr5 (255-333)||(24515482-24515559)
[»] chr1 (5 HSPs)
chr1 (131-319)||(12439759-12439947)
chr1 (247-337)||(19019801-19019891)
chr1 (247-304)||(31910762-31910818)
chr1 (235-319)||(22663963-22664046)
chr1 (246-333)||(24285953-24286041)
[»] chr4 (8 HSPs)
chr4 (102-318)||(22317170-22317386)
chr4 (235-337)||(18445331-18445432)
chr4 (217-312)||(18777245-18777339)
chr4 (102-173)||(39981080-39981151)
chr4 (215-333)||(39981166-39981285)
chr4 (263-333)||(19052737-19052807)
chr4 (289-321)||(24715477-24715509)
chr4 (222-282)||(24955563-24955623)
[»] chr7 (6 HSPs)
chr7 (222-333)||(19143409-19143521)
chr7 (222-333)||(20742808-20742920)
chr7 (236-321)||(19414083-19414168)
chr7 (235-333)||(22974614-22974712)
chr7 (39-174)||(19842927-19843060)
chr7 (235-322)||(20052780-20052865)
[»] chr2 (12 HSPs)
chr2 (132-337)||(26653877-26654084)
chr2 (102-333)||(8685015-8685247)
chr2 (102-321)||(16152786-16153003)
chr2 (247-321)||(26655295-26655369)
chr2 (246-333)||(17418178-17418265)
chr2 (263-333)||(21822995-21823066)
chr2 (247-321)||(21770253-21770326)
chr2 (248-304)||(21823883-21823939)
chr2 (247-321)||(19563995-19564068)
chr2 (235-321)||(27766114-27766199)
chr2 (263-338)||(17435649-17435725)
chr2 (131-209)||(22132764-22132844)
[»] scaffold0211 (1 HSPs)
scaffold0211 (217-321)||(25149-25253)
[»] scaffold0711 (2 HSPs)
scaffold0711 (211-321)||(2222-2332)
scaffold0711 (131-209)||(2170-2248)
[»] scaffold0084 (2 HSPs)
scaffold0084 (222-320)||(18067-18165)
scaffold0084 (226-321)||(30601-30696)
[»] scaffold0004 (2 HSPs)
scaffold0004 (228-321)||(382212-382305)
scaffold0004 (132-190)||(382315-382373)
[»] scaffold0062 (1 HSPs)
scaffold0062 (217-333)||(1078-1195)
[»] scaffold0121 (1 HSPs)
scaffold0121 (237-333)||(10792-10888)
[»] scaffold0002 (2 HSPs)
scaffold0002 (217-333)||(128396-128513)
scaffold0002 (102-174)||(128529-128601)
[»] scaffold0041 (1 HSPs)
scaffold0041 (138-176)||(25972-26010)
[»] scaffold0527 (2 HSPs)
scaffold0527 (230-321)||(1143-1234)
scaffold0527 (230-321)||(9206-9297)
[»] scaffold0300 (1 HSPs)
scaffold0300 (228-303)||(11516-11590)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 10878189 - 10878525
Alignment:
Q  1 aaacaatggatgaatgttcatgttcgtcttcttcctactaagtctcttggtgaaatcttaagcatttaggagtctcaataagttgttattaagcagatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10878189 aaacaatggatgaatgttcatgttcgtcttcttcctactaagtctcttggtgaaatcttaagcatttaggagtctcaataagttgttattaagcaaatgt 10878288  T
Q  101 gaagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10878289 gaagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagca 10878388  T
Q  201 gttgtgcttaatcaaaaagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  10878389 gttgtgcttaatcaaaaagtatcttgtagttgttcttgagcattgagaagtcttttggaagagtccttgaacaatttgtaatccagagtgattatagtga 10878488  T
Q  301 aatcgcttggaagtgcaagggactgaactactcatgt 337  Q
    |||||||||||||||||||||||||||||||||||||    
T  10878489 aatcgcttggaagtgcaagggactgaactactcatgt 10878525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 211
Target Start/End: Original strand, 11829970 - 11830145
Alignment:
Q  39 taagtctcttggtgaaatcttaagcatttaggagtctcaataagttgttattaagcagatgtgaagttttaagcagttatgcttaagaaaatggaagtat 138  Q
    ||||||||||||||||| ||| | ||  ||||||||||| | |||||| ||| || | | |  |||| |||||||||| |||||||| ||| |||||| |    
T  11829970 taagtctcttggtgaaaccttgaacacctaggagtctcagttagttgtgattgagta-agggaaagtcttaagcagttgtgcttaagcaaagggaagtct 11830068  T
Q  139 cttggagttgtccttgagcagaaagtctttaggtag-----tgccttatagcaggaagtcttaagcagttgtgcttaa 211  Q
    ||||||||||| |||| |||  ||||||||||||||     | || || ||||||||||||||| |||||||||||||    
T  11830069 cttggagttgttcttgcgcaagaagtctttaggtagatatattcc-tagagcaggaagtcttaaacagttgtgcttaa 11830145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 333
Target Start/End: Complemental strand, 10923005 - 10922909
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaagggactgaactactc 333  Q
    ||||||||||||||||| |||||||||||| ||||| ||| ||||||| | | | ||||||| ||||||| |||| ||||||||| ||||| |||||||    
T  10923005 cttgagcattgagaagtttcttggaagagtacttgagcaa-ttgtaat-ctgtgagattataatgaaatcccttgaaagtgcaagagactggactactc 10922909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 15331827 - 15331905
Alignment:
Q  132 gaagtatcttggagttgtccttgagca-gaaagtctttaggtagtgccttatagcaggaagtcttaagcagttgtgctt 209  Q
    ||||| |||| || ||||||||||||| | ||||||||||||||||||||| ||||||||||||| ||| | |||||||    
T  15331827 gaagtttctttgaattgtccttgagcaaggaagtctttaggtagtgccttagagcaggaagtcttgagctggtgtgctt 15331905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 13178475 - 13178592
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgc 316  Q
    |||| ||||| |||||| |||||| |  |||||||||||||| || |||||| | | | |||||||||| |||| |||| |||||||| |||| ||||||    
T  13178475 aagtctcttgcagttgtgcttgagaaaagagaagtctcttggtagtgtccttaagctaattgtaatccatagtggttattgtgaaatctcttgcaagtgc 13178574  T
Q  317 aa-gggactgaactactc 333  Q
    || ||||||| |||||||    
T  13178575 aaggggactggactactc 13178592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 4768210 - 4768281
Alignment:
Q  248 aagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaagg 320  Q
    |||||||||| |||||||||||| ||  |||||||| || | ||||||||||||||| |||||||||||||||    
T  4768210 aagtctcttgaaagagtccttgagcat-ttgtaatctagtgagattatagtgaaatctcttggaagtgcaagg 4768281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 13178387 - 13178459
Alignment:
Q  102 aagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtag 174  Q
    |||| ||||||||||  ||||||| ||||| |||| |||||||||| ||||||||||| |||| |||||||||    
T  13178387 aagtcttaagcagttgcgcttaagcaaatgtaagtctcttggagttatccttgagcaggaagtttttaggtag 13178459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 16201793 - 16201876
Alignment:
Q  236 ttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatcca-gagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||  | || |  ||||||||||||| ||||||||||||||||    
T  16201793 ttgagaattgagaagtctcttggaagagtccttgaacatc-tgtaatttatgaat--ttatagtgaaatcccttggaagtgcaaggg 16201876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 333
Target Start/End: Complemental strand, 10917777 - 10917681
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaagggactgaactactc 333  Q
    ||||||||||||||||| |||||||||||||||| | | | |||||||   | | ||||||| ||||||| |||||||| ||||||||||| |||||||    
T  10917777 cttgagcattgagaagtttcttggaagagtccttaagcca-ttgtaat-atgtgagattataatgaaatcccttggaagagcaagggactggactactc 10917681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 20747248 - 20747296
Alignment:
Q  222 tcttgtagttgttcttgagcattgagaagtctcttggaagagtccttga 270  Q
    |||||||  ||| |||||||||||||||||||||| |||||||||||||    
T  20747248 tcttgtaagtgtgcttgagcattgagaagtctcttagaagagtccttga 20747296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 11073937 - 11073852
Alignment:
Q  248 aagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    ||||||||||||||| ||||| | ||| |||||||  || | ||||||||||||||| ||| ||||||||| ||||||| |||||||    
T  11073937 aagtctcttggaagattccttaagcaa-ttgtaatatagtgagattatagtgaaatctcttagaagtgcaaggggactggactactc 11073852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 336
Target Start/End: Original strand, 14427635 - 14427736
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    ||||||||||  ||||||||||||||| |||||||| ||| |||||||   |  ||||| |||||||||| ||||||||  ||| ||||||| |||||||    
T  14427635 cttgagcatttcgaagtctcttggaagtgtccttgagcaa-ttgtaatattgtatgattctagtgaaatcccttggaagctcaaggggactggactactc 14427733  T
Q  334 atg 336  Q
    |||    
T  14427734 atg 14427736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 3646672 - 3646619
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttga 270  Q
    |||| ||||| |||||| ||||||||| | ||||||||||||||| ||||||||    
T  3646672 aagtctcttgcagttgtgcttgagcatagggaagtctcttggaagtgtccttga 3646619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 126 - 333
Target Start/End: Complemental strand, 17206554 - 17206345
Alignment:
Q  126 aaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcagttgtgcttaatcaaa-aagtatct 224  Q
    |||| |||||| |||||||||||||||||| ||  |||||||||||||||| | || |||||||||||||||| |||||||||||| || | |||| |||    
T  17206554 aaaagggaagtctcttggagttgtccttgaacaagaagtctttaggtagtgtcatagagcaggaagtcttaagtagttgtgcttaaacatagaagtttct 17206455  T
Q  225 tgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaag-ggac 323  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| ||   ||||||||||||||||| | |||||||| |||||||||||||| || |    
T  17206454 tgtagttgtgcttgagcattgagaagtcacttggaagagtccttgatcagtatgtaatccagagtgattgtggtgaaatcccttggaagtgcaagtgggc 17206355  T
Q  324 tgaactactc 333  Q
    ||||||||||    
T  17206354 tgaactactc 17206345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 333
Target Start/End: Complemental strand, 34659610 - 34659378
Alignment:
Q  102 aagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcag 201  Q
    |||| |||| ||||| |||||||| |||||||||| |||||||||||||||||  ||  || || ||| |||||| | || ||  |||||||||||||||    
T  34659610 aagtcttaaacagttgtgcttaagcaaatggaagtctcttggagttgtccttggacaagaaatccttaagtagtgtcctagagt-ggaagtcttaagcag 34659512  T
Q  202 ttgtgcttaatcaaa-aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtga 300  Q
     |||| |||| || | |||| ||||| |||||| ||||| ||  |||||||||| |||||| |||||||| |||   |||||||| ||||||||||||||    
T  34659511 gtgtgtttaagcacataagtctcttgcagttgtgcttgaacaaagagaagtctcctggaagtgtccttgagcaatgcgtaatccatagtgattatagtga 34659412  T
Q  301 aatcgcttggaagtgcaa-gggactgaactactc 333  Q
    |||| ||| ||||| ||| ||||||| |||||||    
T  34659411 aatcccttagaagtacaaggggactggactactc 34659378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 19730989 - 19730888
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgc 316  Q
    |||| ||||| |||||| ||||||||| ||||||||||||||||| |||||| | ||| ||||||||| | | ||||||||||||||| ||||||| |||    
T  19730989 aagtctcttgcagttgtgcttgagcatagagaagtctcttggaagtgtccttaatcaatttgtaatcctgtgagattatagtgaaatcccttggaaatgc 19730890  T
Q  317 aa 318  Q
    ||    
T  19730889 aa 19730888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 27167296 - 27167397
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgc 316  Q
    |||| ||||| |||||||||||||||||||||||||||||||  | |||||| | ||| |||||||||| |||||||||||||||||| ||| ||||| |    
T  27167296 aagtctcttgcagttgttcttgagcattgagaagtctcttgg-tgtgtccttaagcaaattgtaatcca-agtgattatagtgaaatcccttagaagtcc 27167393  T
Q  317 aagg 320  Q
    ||||    
T  27167394 aagg 27167397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 333
Target Start/End: Original strand, 21689464 - 21689581
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgc 316  Q
    |||| |||||||||||| ||||||||| |  |||||||||||||  ||| |||| ||| ||||||||    ||||||||||||||||| ||||||||||     
T  21689464 aagtctcttgtagttgtgcttgagcataggcaagtctcttggaaatgtctttgagcaatttgtaatcagttgtgattatagtgaaatcccttggaagtgg 21689563  T
Q  317 aa-gggactgaactactc 333  Q
    || ||||||| |||||||    
T  21689564 aaggggactggactactc 21689581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 20396440 - 20396335
Alignment:
Q  228 agttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg-actga 326  Q
    |||||| |||||||||||||||||||||||  |  |||||||| ||| |||||||| ||| || ||||| | ||||| |||||||||||||||| ||||     
T  20396440 agttgtacttgagcattgagaagtctcttgctat-gtccttgagcaaattgtaatcaagattggttatactaaaatcccttggaagtgcaagggtactgg 20396342  T
Q  327 actactc 333  Q
    |||||||    
T  20396341 actactc 20396335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 4312091 - 4312021
Alignment:
Q  247 gaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa 318  Q
    ||||||||||||| | |||||||| ||| ||||||||||| | | ||||||||||||| |||||||||||||    
T  4312091 gaagtctcttggaggtgtccttgagcaa-ttgtaatccagtgaggttatagtgaaatcccttggaagtgcaa 4312021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 19731077 - 19731005
Alignment:
Q  101 gaagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtag 174  Q
    ||||| ||||| |||| |||||||| |||  ||||| |||| ||||||||||||||||| ||||||||||||||    
T  19731077 gaagtcttaagtagttgtgcttaagcaaagtgaagtctcttagagttgtccttgagcag-aagtctttaggtag 19731005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 20396116 - 20396031
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    |||||||||||||||||||||||| |   ||||| | ||| |||||||| ||| || ||||| | ||||| ||||||||||||||||    
T  20396116 cttgagcattgagaagtctcttggta-tttccttaagcaaattgtaatcaagattggttatactaaaatcccttggaagtgcaaggg 20396031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 240316 - 240364
Alignment:
Q  39 taagtctcttggtgaaatcttaagcatttagg-agtctcaataagttgt 86  Q
    ||||||||||||||||| ||| |||||||||| ||||||||| ||||||    
T  240316 taagtctcttggtgaaaccttgagcatttaggaagtctcaatcagttgt 240364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 10481603 - 10481559
Alignment:
Q  290 gattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||    
T  10481603 gattatagtgaaatcccttggaaatgcaaggggactgaactactc 10481559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 101 - 333
Target Start/End: Complemental strand, 18565615 - 18565381
Alignment:
Q  101 gaagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagca 200  Q
    ||||| ||||||||||   |||| | ||| ||||||  ||||||||||||||||||||  |||||||||||||||| |||| |||||||  || |||||     
T  18565615 gaagtcttaagcagttgctcttatgcaaagggaagtcgcttggagttgtccttgagcaagaagtctttaggtagtgtcttagagcaggagatcataagcg 18565516  T
Q  201 gttgtgcttaatca-aaaagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtg 299  Q
    ||||||||||| || |||||| ||||| |||||| ||||||||  |||||||||||||| || |||||||| ||| |||||||||| |||||||||||||    
T  18565515 gttgtgcttaagcataaaagtctcttgcagttgtgcttgagcaaagagaagtctcttggtagtgtccttgagcaagttgtaatccatagtgattatagtg 18565416  T
Q  300 aaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    |||||  |||||| ||||| ||||||| |||||||    
T  18565415 aaatccattggaaatgcaaggggactggactactc 18565381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 102 - 322
Target Start/End: Original strand, 23433442 - 23433661
Alignment:
Q  102 aagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcag 201  Q
    |||| |||||||||| |||||||| |||||||||| | ||||||||||||||||| || |||||||||||||||| | || ||||  |||||||||||||    
T  23433442 aagtcttaagcagttgtgcttaagcaaatggaagtttattggagttgtccttgagaaggaagtctttaggtagtgtcctagagca-taagtcttaagcag 23433540  T
Q  202 ttgtgcttaa-tcaaaaagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtga 300  Q
     ||||||||| |  |  ||| ||||| | ||||  || ||||  ||||||| |||||||||||||||||| | | ||||||||  | || ||||||||||    
T  23433541 gtgtgcttaagtataggagtctcttgcaattgtggttaagcaaagagaagtttcttggaagagtccttgagc-atttgtaatcatgtgttattatagtga 23433639  T
Q  301 aatcgcttggaagtgcaaggga 322  Q
    |||| |||||||||||||||||    
T  23433640 aatcccttggaagtgcaaggga 23433661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 318
Target Start/End: Original strand, 20267757 - 20267937
Alignment:
Q  138 tcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcagttgtgcttaatcaaa-aagtatcttgtagttgttct 236  Q
    ||||| |||||| ||||||||  |||||||| ||||||| | |  |||||||| ||||| ||||||||  |||| || | || | ||||| |||||  ||    
T  20267757 tcttgaagttgtacttgagcacgaagtcttttggtagtgtcctc-agcaggaactcttaggcagttgtatttaagcatagaaatctcttgcagttgggct 20267855  T
Q  237 tgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa 318  Q
    ||| ||||||||||||||||||||| ||||||||  || ||||||||  | |||| |||||||||||| |||||||||||||    
T  20267856 tgaacattgagaagtctcttggaagtgtccttgagtaatttgtaatcttgtgtgactatagtgaaatcccttggaagtgcaa 20267937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 318
Target Start/End: Original strand, 21054386 - 21054566
Alignment:
Q  138 tcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcagttgtgcttaatcaaa-aagtatcttgtagttgttct 236  Q
    ||||| |||||| ||||||||  |||||||| ||||||| | |  |||||||| ||||| ||||||||  |||| || | || | ||||| |||||  ||    
T  21054386 tcttgaagttgtacttgagcacgaagtcttttggtagtgtcctc-agcaggaactcttaggcagttgtatttaagcatagaaatctcttgcagttgggct 21054484  T
Q  237 tgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa 318  Q
    ||| ||||||||||||||||||||| ||||||||  || ||||||||  | |||| |||||||||||| |||||||||||||    
T  21054485 tgaacattgagaagtctcttggaagtgtccttgagtaatttgtaatcttgtgtgactatagtgaaatcccttggaagtgcaa 21054566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 211410 - 211506
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaag 313  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||| |||||||| ||| ||||||||     |||||||||||||||| ||||||||    
T  211410 aagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaag 211506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 240846 - 240750
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaag 313  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||| |||||||| ||| ||||||||     |||||||||||||||| ||||||||    
T  240846 aagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaag 240750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 313
Target Start/End: Original strand, 725033 - 725129
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaag 313  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||| |||||||| ||| ||||||||     |||||||||||||||| ||||||||    
T  725033 aagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaag 725129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 794201 - 794105
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaag 313  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||| |||||||| ||| ||||||||     |||||||||||||||| ||||||||    
T  794201 aagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaag 794105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 21838441 - 21838343
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtg 315  Q
    |||| ||||| |||||| |||||||| ||||||||||||  |||||| ||||||  || |||||||||||||||||| | |||||||| ||||||||||    
T  21838441 aagtctcttgcagttgtgcttgagcactgagaagtctctgagaagagcccttgagaaatttgtaatccagagtgattctggtgaaatctcttggaagtg 21838343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 5825398 - 5825278
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgc 316  Q
    |||| ||||| ||||||  |||||||||||||| ||||||||   | ||||||| ||| |||||||| |||||||||||||||||||| | || |||||     
T  5825398 aagtctcttgcagttgtgtttgagcattgagaattctcttggtgta-tccttgagcaagttgtaatcgagagtgattatagtgaaatcccctgaaagtga 5825300  T
Q  317 aa-gggactgaactactcatgt 337  Q
    || ||||||| |||||||||||    
T  5825299 aaggggactggactactcatgt 5825278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 5825881 - 5825816
Alignment:
Q  107 ttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggta 173  Q
    ||||||| ||||||||||| ||| |||||| | |||||||||||||||||||  |||||||||||||    
T  5825881 ttaagcatttatgcttaagcaaa-ggaagtcttttggagttgtccttgagcatgaagtctttaggta 5825816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 23586710 - 23586790
Alignment:
Q  255 ttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactcat 335  Q
    ||||||| |||||||  ||| |||||||| || |||||||||||||||   ||||||||||||| |||||||||||||||||    
T  23586710 ttggaagtgtccttgggcaa-ttgtaatctagtgtgattatagtgaaaatccttggaagtgcaaggggactgaactactcat 23586790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 13644768 - 13644681
Alignment:
Q  247 gaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaag-ggactgaactactc 333  Q
    ||||||||||| ||||||||| || |||  ||||||   | ||||||||||||||||| |||| ||||||||| |||||| |||||||    
T  13644768 gaagtctcttgtaagagtcctagagcaatatgtaattatgtgtgattatagtgaaatcccttgaaagtgcaagcggactggactactc 13644681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 13745193 - 13745106
Alignment:
Q  247 gaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaag-ggactgaactactc 333  Q
    ||||||||||| ||||||||| || |||  ||||||   | ||||||||||||||||| |||| ||||||||| |||||| |||||||    
T  13745193 gaagtctcttgtaagagtcctagagcaatatgtaattatgtgtgattatagtgaaatcccttgaaagtgcaagcggactggactactc 13745106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 143 - 333
Target Start/End: Complemental strand, 22748011 - 22747820
Alignment:
Q  143 gagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcagttgtgcttaatcaaaaagtatcttgtagttgttcttgagca 242  Q
    ||||| ||||||||||  |||||||||||||| | | |  || ||||||||||||||||||||||||||   | |||| ||||| |||||| ||||||||    
T  22748011 gagttatccttgagcaagaagtctttaggtagagtcctggaggaggaagtcttaagcagttgtgcttaagttagaagtctcttgcagttgtgcttgagca 22747912  T
Q  243 ttgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    ||||||||||||||||||||||||||||  || |||||||||   || |||||||||||||| ||||||||||||| ||||||| |||||||    
T  22747911 ttgagaagtctcttggaagagtccttgagaaatttgtaatcctatgttattatagtgaaatcccttggaagtgcaaggggactggactactc 22747820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 24885850 - 24885931
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa 318  Q
    ||||||||||||||||||||||||  | |||||| | ||| |||||||| |||||||||||||||||||| |||||||||||||    
T  24885850 cttgagcattgagaagtctcttggt-gtgtccttaagcaaattgtaatc-agagtgattatagtgaaatcccttggaagtgcaa 24885931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 19570129 - 19570233
Alignment:
Q  102 aagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcag 201  Q
    |||| |||||||||| |||||| | ||| |||||| ||||||||||||||| ||| |  |||||||||||| ||| | || |||| |||||||| |||||    
T  19570129 aagtcttaagcagttgtgcttatgcaaagggaagtttcttggagttgtcctcgagtaagaagtctttaggtggtgtcctaaagcaagaagtcttgagcag 19570228  T
Q  202 ttgtg 206  Q
    |||||    
T  19570229 ttgtg 19570233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 12046752 - 12046681
Alignment:
Q  228 agttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtg 299  Q
    |||||| |||||| |||||||||||||||| || ||||||||||||| | | |||| |||||||||||||||    
T  12046752 agttgtgcttgagtattgagaagtctcttgaaaaagtccttgaacaattagcaatctagagtgattatagtg 12046681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 9823776 - 9823702
Alignment:
Q  247 gaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    ||||||||||||||| |||||||| ||| ||||||||  | ||||| ||||||||||| |||| |||||||||||    
T  9823776 gaagtctcttggaagtgtccttgagcaatttgtaatcatgtgtgatgatagtgaaatcccttgaaagtgcaaggg 9823702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 322
Target Start/End: Complemental strand, 28759970 - 28759885
Alignment:
Q  236 ttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggga 322  Q
    |||||||||||||||||||||||  | |||||| | ||| |||||||| ||| |||||||||||||||  ||||||||| |||||||    
T  28759970 ttgagcattgagaagtctcttggt-gtgtccttaagcaaattgtaatcaagattgattatagtgaaattccttggaagtacaaggga 28759885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 24163196 - 24163080
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgc 316  Q
    |||| ||||| |||||| ||||||||||||||||||| |||| |  |||||||| ||| | ||| || ||| || |||||||||||||  ||||||||||    
T  24163196 aagtctcttgcagttgtacttgagcattgagaagtctattggta-tgtccttgagcaaatcgtactcaagattggttatagtgaaatccattggaagtgc 24163098  T
Q  317 aa-gggactgaactactc 333  Q
    || ||||||| |||||||    
T  24163097 aaggggactggactactc 24163080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 18304037 - 18303908
Alignment:
Q  43 tctcttggtgaaatcttaagcatttaggagtctcaataagttgttattaagcagatgtgaagttttaagcagttatgcttaagaaaatggaagtatcttg 142  Q
    ||||||||||||| ||| ||||  ||||||||||||| |||||| ||| ||||   | ||  | ||||||||||| ||||||| ||  |||||| |||||    
T  18304037 tctcttggtgaaaccttgagcacctaggagtctcaatcagttgtaattgagcaagggcgac-tattaagcagttacgcttaagcaaggggaagtgtcttg 18303939  T
Q  143 gagttgtccttgagcagaaagtctttaggtag 174  Q
    ||||||||||||| || |||||| ||||||||    
T  18303938 gagttgtccttgaaca-aaagtccttaggtag 18303908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 333
Target Start/End: Original strand, 24495125 - 24495222
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    ||||||||||  |||||||||||||||||||| ||| ||| ||||||| ||| | ||||||| ||||||| |||| |||||||| ||||||| |||||||    
T  24495125 cttgagcatttggaagtctcttggaagagtccctgagcaa-ttgtaat-cagtgagattataatgaaatcccttgaaagtgcaaggggactggactactc 24495222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 19570247 - 19570317
Alignment:
Q  248 aagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa 318  Q
    ||||||||||||||  ||||||| ||| |||||||  ||||||||||||||||||||  ||| ||||||||    
T  19570247 aagtctcttggaagtctccttgagcaatttgtaatttagagtgattatagtgaaatccattgaaagtgcaa 19570317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 12063247 - 12063320
Alignment:
Q  246 agaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaag 319  Q
    |||||||| ||||  | ||||||||  || |||||||| |||||||||||||||||||| |||| |||||||||    
T  12063247 agaagtcttttggttgtgtccttgagtaagttgtaatctagagtgattatagtgaaatcccttgaaagtgcaag 12063320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 22797701 - 22797798
Alignment:
Q  237 tgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    ||||||| ||||||||||||||||  ||||||||  || ||||||||    |||| |||||||||||| |||| |||||||| ||||||| |||||||    
T  22797701 tgagcatagagaagtctcttggaattgtccttgagaaatttgtaatcagttgtgactatagtgaaatcccttgtaagtgcaaggggactggactactc 22797798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 336
Target Start/End: Complemental strand, 22820860 - 22820779
Alignment:
Q  255 ttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaag-ggactgaactactcatg 336  Q
    ||||||| ||| |||||||| |||||||| || | |||||||| |||||| |||||||||||||| |||||| |||| |||||    
T  22820860 ttggaagtgtctttgaacaa-ttgtaatctagtgagattatagcgaaatctcttggaagtgcaagaggactggactagtcatg 22820779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 24515482 - 24515559
Alignment:
Q  255 ttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaagggactgaactactc 333  Q
    |||||||||||||||| ||| |||||||  ||   |||||||||||| || ||||||||||| |||||||| |||||||    
T  24515482 ttggaagagtccttgagcaa-ttgtaatttagtaagattatagtgaactcccttggaagtgctagggactggactactc 24515559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 319
Target Start/End: Original strand, 12439759 - 12439947
Alignment:
Q  131 ggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcagttgtgcttaatcaaa-aagtatcttgtag 229  Q
    |||||| |||||||||||| |||||||| ||| | ||||||||||| |||| || ||||||||||||| || ||||||||| ||   |||| ||||| ||    
T  12439759 ggaagtctcttggagttgttcttgagcataaa-tatttaggtagtgtcttagagaaggaagtcttaagtaggtgtgcttaagcattgaagtctcttgcag 12439857  T
Q  230 ttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaag 319  Q
    |||| ||||||||||||||||||||||| ||| || ||||| ||  |||||||||| |||||||||||||||||| ||||||||||||||    
T  12439858 ttgtgcttgagcattgagaagtctcttgaaagtgtgcttgagcattttgtaatccatagtgattatagtgaaatcccttggaagtgcaag 12439947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 19019801 - 19019891
Alignment:
Q  247 gaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactcatgt 337  Q
    |||||||||||||||||||||||| ||| | |||||| || | ||||||||||||||  |||  |||||||| ||||||| |||||||||||    
T  19019801 gaagtctcttggaagagtccttgagcaa-tggtaatctagtgagattatagtgaaattccttaaaagtgcaaggggactggactactcatgt 19019891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 31910818 - 31910762
Alignment:
Q  247 gaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatc 304  Q
    ||||||| |||||||||||||||||||| |||||||| | ||||||||||| ||||||    
T  31910818 gaagtctattggaagagtccttgaacaa-ttgtaatcaatagtgattatagagaaatc 31910762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 22664046 - 22663963
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaag 319  Q
    ||||||||||  |||||||||| ||||||||||||| | | || ||||| || | |||||||| |||||| ||| ||||||||||    
T  22664046 cttgagcatttggaagtctcttagaagagtccttgagcta-ttataatctagtgagattatagcgaaatcccttagaagtgcaag 22663963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 24285953 - 24286041
Alignment:
Q  246 agaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    |||||| ||||| ||| || ||||| ||| || |||||||||||||||| ||| |||||  ||||||||| || ||||||| |||||||    
T  24285953 agaagtatcttgcaagggttcttgagcaatttttaatccagagtgattacagtaaaatcctttggaagtgtaaggggactggactactc 24286041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 102 - 318
Target Start/End: Original strand, 22317170 - 22317386
Alignment:
Q  102 aagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcag 201  Q
    |||| ||||| ||||  ||||| | ||| |||||| |||||||||||||||||||||||| | |||| | ||||| | || |||||||| ||||||| ||    
T  22317170 aagtcttaagtagttgcgcttacgcaaagggaagtctcttggagttgtccttgagcagaa-gactttggatagtgtcctagagcaggaattcttaagaag 22317268  T
Q  202 ttgtgcttaatcaaa-aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtga 300  Q
    |||||||||| || | |||| ||||  |  ||| ||||||||  ||||||| || |||||| |||||||| ||| |||||||||||||||||||||||||    
T  22317269 ttgtgcttaagcatagaagtctcttacaactgtacttgagcaaagagaagtgtcctggaagtgtccttgagcaatttgtaatccagagtgattatagtga 22317368  T
Q  301 aatcgcttggaagtgcaa 318  Q
    |||| |||||||||||||    
T  22317369 aatcccttggaagtgcaa 22317386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 18445432 - 18445331
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaag-ggactgaactactc 333  Q
    ||||||||||  |||||||||||||||||||||||| ||| ||||||| | | | ||||||||  ||||| |||||||||||||| |||||| |||||||    
T  18445432 cttgagcatttggaagtctcttggaagagtccttgagcaa-ttgtaat-ctgtgagattataggaaaatcccttggaagtgcaagaggactggactactc 18445335  T
Q  334 atgt 337  Q
    ||||    
T  18445334 atgt 18445331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 18777245 - 18777339
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaa 312  Q
    |||| ||||| ||||||  |||||||||||||| ||||||||  | |||||||| ||| ||||||| || |||||||||||||||||| |||||||    
T  18777245 aagtctcttgcagttgtgtttgagcattgagaaatctcttggt-gtgtccttgagcaagttgtaattcaaagtgattatagtgaaatcccttggaa 18777339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 39981080 - 39981151
Alignment:
Q  102 aagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggta 173  Q
    |||| ||||||||||||||||||| ||  |||||| ||||||||||||| ||| |||| |||||||||||||    
T  39981080 aagtcttaagcagttatgcttaagcaatgggaagtttcttggagttgtctttgggcaggaagtctttaggta 39981151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 333
Target Start/End: Original strand, 39981166 - 39981285
Alignment:
Q  215 aaaagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagt 314  Q
    |||||| ||||| |||||| ||||||||  ||||||||||||| ||  |||||||| ||  |||||||||    |||||||||||||||  |||||||||    
T  39981166 aaaagtgtcttgcagttgtgcttgagcaaagagaagtctcttgaaaatgtccttgagcattttgtaatcctttatgattatagtgaaattccttggaagt 39981265  T
Q  315 gcaag-ggactgaactactc 333  Q
    ||||| |||||| |||||||    
T  39981266 gcaagtggactggactactc 39981285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 19052807 - 19052737
Alignment:
Q  263 gtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    |||||||| ||| ||||||||  | ||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  19052807 gtccttgagcaa-ttgtaatcttgtgtgattatagtgaaatcccttggaagtgcaaggggactggactactc 19052737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 24715509 - 24715477
Alignment:
Q  289 tgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    |||||||||||||||||||| ||||||||||||    
T  24715509 tgattatagtgaaatcgctttgaagtgcaaggg 24715477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 24955563 - 24955623
Alignment:
Q  222 tcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaat 282  Q
    |||||||||||| ||||||||| ||||| || |||||||  |||||||| ||| |||||||    
T  24955563 tcttgtagttgtgcttgagcatagagaaatcacttggaattgtccttgagcaatttgtaat 24955623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 19143409 - 19143521
Alignment:
Q  222 tcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||||||||  || |||||||| |||||||||||||||||||| ||||||||||||||||    
T  19143409 tcttgcagttgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtgaaatcccttggaagtgcaaggg 19143508  T
Q  322 -actgaactactc 333  Q
     ||||||||||||    
T  19143509 aactgaactactc 19143521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 20742808 - 20742920
Alignment:
Q  222 tcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||||||||  || |||||||| |||||||||||||||||||| ||||||||||||||||    
T  20742808 tcttgcagttgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtgaaatcccttggaagtgcaaggg 20742907  T
Q  322 -actgaactactc 333  Q
     ||||||||||||    
T  20742908 aactgaactactc 20742920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 236 - 321
Target Start/End: Complemental strand, 19414168 - 19414083
Alignment:
Q  236 ttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    ||||||||||||||||||||||| || ||||||||  || |||||||| ||| |||||||||||||||| ||||||||||||||||    
T  19414168 ttgagcattgagaagtctcttgggagtgtccttgagaaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggg 19414083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 333
Target Start/End: Complemental strand, 22974712 - 22974614
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    ||||||||||||||||||||||||| |||||||||| ||| |||||||| ||   ||||||| | ||||| ||||||||||||| |||| ||||||||||    
T  22974712 cttgagcattgagaagtctcttggacgagtccttgagcaa-ttgtaatctagttagattatactaaaatcccttggaagtgcaaggggagtgaactactc 22974614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 19842927 - 19843060
Alignment:
Q  39 taagtctcttggtgaaatcttaagcatttagg-agtctcaataagttgttattaagcagatgtgaagttttaagcagttatgcttaagaaaatggaagta 137  Q
    ||||||||||||||||| ||||||||  |||| |||||||||||||||| ||| |||||  || |||| ||||| |||| |||||||  ||| ||||||     
T  19842927 taagtctcttggtgaaaccttaagcacctaggaagtctcaataagttgtgattgagcag-ggtaaagtcttaagtagttgtgcttaaccaaa-ggaagtc 19843024  T
Q  138 tcttggagttgtccttgagcagaaagtctttaggtag 174  Q
    ||||| || ||| ||||||||| ||||||||||||||    
T  19843025 tcttgcaggtgttcttgagcag-aagtctttaggtag 19843060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 20052865 - 20052780
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggga 322  Q
    ||||||||||||||||||||||||   | ||||||| ||| |||||||| | |||||||||||||||||| ||  |||||||||||||    
T  20052865 cttgagcattgagaagtctcttggtgta-tccttgagcaagttgtaatcta-agtgattatagtgaaatccctaagaagtgcaaggga 20052780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 132 - 337
Target Start/End: Original strand, 26653877 - 26654084
Alignment:
Q  132 gaagtatcttggagttgtccttgagca-gaaagtctttaggtagtgccttatagcaggaagtcttaagcagttgtgcttaatcaaa-aagtatcttgtag 229  Q
    ||||| |||||||||| |||||||| | | |||||||||||||||| | |||| |||||||| || ||||||||||||| |  ||  |||| |   | ||    
T  26653877 gaagtctcttggagttttccttgagtaaggaagtctttaggtagtgtcctatatcaggaagtattgagcagttgtgcttgaggaaggaagttttgagcag 26653976  T
Q  230 ttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg-actgaac 328  Q
    |||| ||||||||  ||||||||||||||||| |||||||| ||| |||||||||| |||||||||||||||||| |||||||||||||||| ||| |||    
T  26653977 ttgtgcttgagcaa-gagaagtctcttggaagtgtccttgaccaatttgtaatccaaagtgattatagtgaaatcacttggaagtgcaagggtacttaac 26654075  T
Q  329 tactcatgt 337  Q
    |||| ||||    
T  26654076 tacttatgt 26654084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 333
Target Start/End: Complemental strand, 8685247 - 8685015
Alignment:
Q  102 aagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcag 201  Q
    |||| |||||||||| |||||||| ||| |||||| | |||||||||||||| ||||| ||||||||||||||||   || ||||  || ||||||||||    
T  8685247 aagtcttaagcagttgtgcttaagcaaagggaagtctattggagttgtcctttagcaggaagtctttaggtagtgttctagagca-taaatcttaagcag 8685149  T
Q  202 ttgtgcttaa-tcaaaaagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtga 300  Q
     ||||||||| |  |  ||| ||||| | ||||  |||||||  ||||||| |||||||||||| ||||| ||  || |||||  | |||||||||||||    
T  8685148 gtgtgcttaagtataggagtctcttgcaattgtggttgagcaaagagaagtttcttggaagagtgcttgagcattttataatcatgtgtgattatagtga 8685049  T
Q  301 aatcgcttggaagtgcaa-gggactgaactactc 333  Q
    |||| ||||||||||||| ||||||| |||||||    
T  8685048 aatcccttggaagtgcaaggggactggactactc 8685015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 321
Target Start/End: Original strand, 16152786 - 16153003
Alignment:
Q  102 aagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcaga-aagtctttaggtagtgccttatagcaggaagtcttaagca 200  Q
    |||| ||||| |||| |||||| | ||| | |||| |||||||||| |||||| ||| | |||||||||||||||| | || ||||| |||| |||||||    
T  16152786 aagtcttaagaagttgtgcttaggcaaaggaaagtctcttggagttttccttg-gcaaagaagtctttaggtagtgtcctagagcag-aagttttaagca 16152883  T
Q  201 gttgtgcttaatcaaa-aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtg 299  Q
    | ||||||||| || | |||  ||||| |||||| ||||||||  ||||||| |  | |||| |||||||| ||| ||||||| ||||||||||||||||    
T  16152884 ggtgtgcttaagcatagaagcctcttgcagttgtgcttgagcaaagagaagtat--tagaagtgtccttgagcaatttgtaattcagagtgattatagtg 16152981  T
Q  300 aaatcgcttggaagtgcaaggg 321  Q
     |||| ||| |||||| |||||    
T  16152982 taatccctttgaagtgaaaggg 16153003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 26655295 - 26655369
Alignment:
Q  247 gaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    ||||||||||||||| ||||||| |||| ||||||||  | ||||||||||||||||| |||| |||||||||||    
T  26655295 gaagtctcttggaagggtccttggacaatttgtaatcatgtgtgattatagtgaaatcccttgaaagtgcaaggg 26655369  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 17418178 - 17418265
Alignment:
Q  246 agaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    |||||||||||  |||||||||||| ||| |||||||| |||||||||||||||||||  |||||||| |||| ||||||| |||||||    
T  17418178 agaagtctcttaaaagagtccttgagcaa-ttgtaatcaagagtgattatagtgaaattccttggaagcgcaaggggactggactactc 17418265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 21823066 - 21822995
Alignment:
Q  263 gtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    |||||||| |||  ||||||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  21823066 gtccttgagcaagctgtaatcgagagtgattatagtgaaatcccttggaagtgcaatgggactggactactc 21822995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 21770253 - 21770326
Alignment:
Q  247 gaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    |||||||||||||||||||||||| ||| |||||||| ||   ||||||||||||||| ||| ||||||||||||    
T  21770253 gaagtctcttggaagagtccttgagcaa-ttgtaatctagtaagattatagtgaaatctcttagaagtgcaaggg 21770326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 21823939 - 21823883
Alignment:
Q  248 aagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatc 304  Q
    |||||||||||  | |||||||| | | |||||||||||||||||||||||||||||    
T  21823939 aagtctcttggttgtgtccttgagcgagttgtaatccagagtgattatagtgaaatc 21823883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 19564068 - 19563995
Alignment:
Q  247 gaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    |||||||||||||||||||||| |  || ||||||||   |||||||||| |||| || ||||||||||||||||    
T  19564068 gaagtctcttggaagagtccttcagtaa-ttgtaatcagtagtgattataatgaattcccttggaagtgcaaggg 19563995  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 27766114 - 27766199
Alignment:
Q  235 cttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    ||||||||||  ||||||| ||| ||  |||||||| ||| |||||||| || ||||||||||||||||  |||||||||| |||||    
T  27766114 cttgagcatttggaagtcttttgaaattgtccttgagcaa-ttgtaatctagtgtgattatagtgaaattccttggaagtgtaaggg 27766199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 338
Target Start/End: Complemental strand, 17435725 - 17435649
Alignment:
Q  263 gtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgc-aagggactgaactactcatgtt 338  Q
    ||||||||  || ||||| || ||| |||||||||||||||| ||||||||||| ||||||||| | ||||| ||||    
T  17435725 gtccttgagaaaattgtattcaagattgattatagtgaaatcccttggaagtgcaaagggactggagtactcttgtt 17435649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 22132764 - 22132844
Alignment:
Q  131 ggaagtatcttggagttgtccttgagc-agaaagtctttaggtagtgccttatagc-aggaagtcttaagcagttgtgctt 209  Q
    |||||| |||||||||||||||||||| || |||||||||| ||||| | || ||| |||||||||| || ||||| ||||    
T  22132764 ggaagtctcttggagttgtccttgagcaaggaagtctttagatagtgacctagagcaaggaagtcttgagtagttgggctt 22132844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 217 - 321
Target Start/End: Complemental strand, 25253 - 25149
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgc 316  Q
    |||| ||||| | |||| |||||||||| |||||||| |||||||||||||||| ||| |||||||||| |||||||||||||||| | |||||||||||    
T  25253 aagtgtcttgcaattgtgcttgagcattaagaagtctattggaagagtccttgagcaatttgtaatccaaagtgattatagtgaaaccccttggaagtgc 25154  T
Q  317 aaggg 321  Q
    |||||    
T  25153 aaggg 25149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 211 - 321
Target Start/End: Original strand, 2222 - 2332
Alignment:
Q  211 atcaaaaagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttgg 310  Q
    ||||| |||| | ||| |||||| |||||  ||| | ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||  ||||    
T  2222 atcaagaagtcttttgcagttgtgcttgacaattaataagtctcttggaagagtccttgagcaatttgtaatccagagtgattatagtgaaatcttttgg 2321  T
Q  311 aagtgcaaggg 321  Q
    |||||||||||    
T  2322 aagtgcaaggg 2332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 2170 - 2248
Alignment:
Q  131 ggaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaagtcttaagcagttgtgctt 209  Q
    |||||| ||||||| || ||||||||||  |||||||||||||||| | || | || ||||||||  ||||||||||||    
T  2170 ggaagtctcttggaattttccttgagcaagaagtctttaggtagtgtcctagatcaagaagtcttttgcagttgtgctt 2248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 222 - 320
Target Start/End: Original strand, 18067 - 18165
Alignment:
Q  222 tcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaagg 320  Q
    ||||| |||||| ||||||||| ||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||| | ||||||||| |||||    
T  18067 tcttgcagttgtgcttgagcatagagaagtatcttggaagagtccttgagcaatttttaatccagagtgattatagtgaaacctcttggaagtacaagg 18165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 30601 - 30696
Alignment:
Q  226 gtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    |||||||| |||||||||||||||||||  | ||||||||||||| ||| |||||||||| ||| |||||||||||| | ||||||||||||||||    
T  30601 gtagttgtgcttgagcattgagaagtctactagaagagtccttgagcaatttgtaatccaaagtaattatagtgaaaccccttggaagtgcaaggg 30696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 321
Target Start/End: Complemental strand, 382305 - 382212
Alignment:
Q  228 agttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    |||||| |||||||||| ||||||||||||||||||||||||| ||| ||||||||  ||||||||||||||||||| ||| ||| ||||||||    
T  382305 agttgtgcttgagcattaagaagtctcttggaagagtccttgagcaatttgtaatcatgagtgattatagtgaaatctcttagaactgcaaggg 382212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 382373 - 382315
Alignment:
Q  132 gaagtatcttggagttgtccttgagcagaaagtctttaggtagtgccttatagcaggaa 190  Q
    ||||| |||||||||||| ||||||||  |||||||||||||||| | || ||||||||    
T  382373 gaagtctcttggagttgttcttgagcaagaagtctttaggtagtgtcctagagcaggaa 382315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 1195 - 1078
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgc 316  Q
    |||| ||||| |||||| ||||||||||| ||||||||||||||| ||||||||  || ||||||||  | ||||| ||||||||||| ||||||||||     
T  1195 aagtctcttgcagttgtgcttgagcattgcgaagtctcttggaagtgtccttgagaaatttgtaatcgtgtgtgatcatagtgaaatctcttggaagtgt 1096  T
Q  317 aagg-gactgaactactc 333  Q
    |||| ||||| |||||||    
T  1095 aaggagactggactactc 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 10792 - 10888
Alignment:
Q  237 tgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaa-gggactgaactactc 333  Q
    ||||||||||||||||||||||  |  ||||||||||| |||||||| ||| |||||||||||||| | ||  ||||||||| ||||||| |||||||    
T  10792 tgagcattgagaagtctcttggt-gtttccttgaacaaattgtaatcaagattgattatagtgaaaaccctgtgaagtgcaaggggactggactactc 10888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 333
Target Start/End: Complemental strand, 128513 - 128396
Alignment:
Q  217 aagtatcttgtagttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgc 316  Q
    |||| ||||| |||||| |||||| |  |||||||||||||| || |||||| | | | |||||||||| |||| |||| |||||||| |||| ||||||    
T  128513 aagtctcttgcagttgtgcttgagaaaagagaagtctcttggtagtgtccttaagctaattgtaatccatagtggttattgtgaaatctcttgcaagtgc 128414  T
Q  317 aa-gggactgaactactc 333  Q
    || ||||||| |||||||    
T  128413 aaggggactggactactc 128396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 128601 - 128529
Alignment:
Q  102 aagttttaagcagttatgcttaagaaaatggaagtatcttggagttgtccttgagcagaaagtctttaggtag 174  Q
    |||| ||||||||||  ||||||| ||||| |||| |||||||||| ||||||||||| |||| |||||||||    
T  128601 aagtcttaagcagttgcgcttaagcaaatgtaagtctcttggagttatccttgagcaggaagtttttaggtag 128529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 26010 - 25972
Alignment:
Q  138 tcttggagttgtccttgagcagaaagtctttaggtagtg 176  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  26010 tcttggagttgtccttgagcaggaagtctttaggtagtg 25972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 1143 - 1234
Alignment:
Q  230 ttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    |||| |||||||||   ||||||||||||||| |||||  | ||| ||| ||||   |||||||||||||||||| |||||| |||||||||    
T  1143 ttgtgcttgagcataaggaagtctcttggaagtgtcctctagcaatttgcaatcagtagtgattatagtgaaatcccttggatgtgcaaggg 1234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 9206 - 9297
Alignment:
Q  230 ttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 321  Q
    |||| |||||||||   ||||||||||||||| |||||  | ||| ||| ||||   |||||||||||||||||| |||||| |||||||||    
T  9206 ttgtgcttgagcataaggaagtctcttggaagtgtcctctagcaatttgcaatcagtagtgattatagtgaaatcccttggatgtgcaaggg 9297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 11590 - 11516
Alignment:
Q  228 agttgttcttgagcattgagaagtctcttggaagagtccttgaacaacttgtaatccagagtgattatagtgaaat 303  Q
    |||||| ||||||||||||||||||||||||    ||||||||  || ||||||||||  ||||||||||||||||    
T  11590 agttgtgcttgagcattgagaagtctcttgggtatgtccttgagaaaattgtaatcca-tgtgattatagtgaaat 11516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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