View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20417_low_3 (Length: 287)
Name: NF20417_low_3
Description: NF20417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20417_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 40837255 - 40837513
Alignment:
| Q |
18 |
catgtgaaaatctccaaagcaaatgcaatggtacccaaacctataagaattccaatgtaactccacctccacctactacccccatgcaaaatgttaattc |
117 |
Q |
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| T |
40837255 |
catgtgaaaatctccaaagcaaatgcaatggtacccaaacctataagaattccaatgtaactccacctccagctactacccccatgcaaaatgttaattc |
40837354 |
T |
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| Q |
118 |
ctttaaatatgtttataactatgatagccagtagtccatatccaagaaaatgatgatacatattccaatatttccggtaatcatctttcgacttgggttt |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40837355 |
ctttaaatatgtttatgactatgatagccagtagtccatatccaagaaaatgatgatacatattccaatatttccggtaatcatctgtcgacttgggttt |
40837454 |
T |
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| Q |
218 |
taagcgaaaagccaacatctgaaaatagcaaaattccattctttcattatacatttcat |
276 |
Q |
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| T |
40837455 |
taagcgaaaagccaacatctgaaaatagcaaaattccattctttcattatacatttcat |
40837513 |
T |
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