View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20417_low_7 (Length: 210)
Name: NF20417_low_7
Description: NF20417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20417_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 47073725 - 47073549
Alignment:
| Q |
19 |
ggtagcagctcctaatattaatacgataagttaataataacaatttattatgcatacagttcagggaaggactcttgctcatcaatcatgaacttgatac |
118 |
Q |
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| T |
47073725 |
ggtagcagctcctaatattaatacgataagttaataataacaatttgttatgcatacagttcagggaaggactcttgctcatcaatcatgaacttgttac |
47073626 |
T |
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| Q |
119 |
attctttnnnnnnnnctaacatatagttttcctatgtgtttaggttgtaggagttaaaggaataatggaggcctatg |
195 |
Q |
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| T |
47073625 |
attctttaaaaaaaactaacatatagttttcctatgtgtttaggttgtaggagttgaaggaataatggaggcttatg |
47073549 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 18231558 - 18231600
Alignment:
| Q |
153 |
tgtgtttaggttgtaggagttaaaggaataatggaggcctatg |
195 |
Q |
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| T |
18231558 |
tgtgtttaggttgtaggagttgaaggcataatggaggcttatg |
18231600 |
T |
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