View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20418_high_1 (Length: 571)
Name: NF20418_high_1
Description: NF20418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20418_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 5e-73; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 332 - 539
Target Start/End: Complemental strand, 6568347 - 6568140
Alignment:
| Q |
332 |
taaaaataagtcatcaagtccagaacagtttcataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaa |
431 |
Q |
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| T |
6568347 |
taaaaataagccatcaagtctagaacagtttcataaactactttttgtagggattcaaaccattgttgttatttttgtgctagtaacttctgtaaagcaa |
6568248 |
T |
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| Q |
432 |
aggataaacaacaattcggtttttactgctatgttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaat |
531 |
Q |
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| T |
6568247 |
aggaacaacaaccctttggtttttactgctatgttgtgttgttttcatcatgttggatctcactcgcacaattgaaatgtgactgtacttgtgctcaaat |
6568148 |
T |
|
| Q |
532 |
tctaataa |
539 |
Q |
| |
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|||||||| |
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| T |
6568147 |
tctaataa |
6568140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 364 - 539
Target Start/End: Complemental strand, 6598515 - 6598340
Alignment:
| Q |
364 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
463 |
Q |
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| T |
6598515 |
ataagctactttttgtagggatccaaaccattgttgttaattttgttctagtaacttctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6598416 |
T |
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| Q |
464 |
gttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaattctaataa |
539 |
Q |
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| T |
6598415 |
gttgtgttgttttcatcatgttggacctcactagcacaattgaaatgtgactatacttgtgctcaaattctaataa |
6598340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 364 - 539
Target Start/End: Complemental strand, 6653189 - 6653015
Alignment:
| Q |
364 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
463 |
Q |
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| T |
6653189 |
ataagctactttttgtagggatttaaaccattgttgttaattttgttctagtaacctctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6653090 |
T |
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| Q |
464 |
gttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaattctaataa |
539 |
Q |
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| T |
6653089 |
gttgtcttgtttttatcatgttggatctcattagcacaattgaaatgtgactgt-cttgtgctaaaattctaataa |
6653015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 364 - 539
Target Start/End: Complemental strand, 6733589 - 6733415
Alignment:
| Q |
364 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
463 |
Q |
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| T |
6733589 |
ataagctactttttgtagggatttaaaccattgttgttaattttgttctagtaacctctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6733490 |
T |
|
| Q |
464 |
gttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaattctaataa |
539 |
Q |
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| T |
6733489 |
gttgtcttgtttttatcatgttggatctcattagcacaattgaaatgtgactgt-cttgtgctaaaattctaataa |
6733415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 6599461 - 6599334
Alignment:
| Q |
19 |
tgaatgtttcccaattagtgatccaaggttatatagcaactacccacaatcaagcacaagataatggtaggagatgagatgaaactcatgtctgatatca |
118 |
Q |
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| T |
6599461 |
tgaatgtttccccattagtgatccaaagttatatagcaaccacccacaattgaccacaagataatggtaagagattagatgaaactcatctctcatatca |
6599362 |
T |
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| Q |
119 |
aaattgtatagcaaccaacaaagataat |
146 |
Q |
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| T |
6599361 |
aaattgtatagcaacaaacagagataat |
6599334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 6674914 - 6674787
Alignment:
| Q |
19 |
tgaatgtttcccaattagtgatccaaggttatatagcaactacccacaatcaagcacaagataatggtaggagatgagatgaaactcatgtctgatatca |
118 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||| ||||||||| | ||||||||||||||| ||||| ||||||||||||| ||| |||||| |
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| T |
6674914 |
tgaatgtttccccattagtgatccaaagttatatagcaaccacccacaattgaccacaagataatggtaagagattagatgaaactcatctctcatatca |
6674815 |
T |
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| Q |
119 |
aaattgtatagcaaccaacaaagataat |
146 |
Q |
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| T |
6674814 |
aaattgtatagcaacaaacagagataat |
6674787 |
T |
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