View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20418_high_2 (Length: 467)
Name: NF20418_high_2
Description: NF20418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20418_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 52591599 - 52591169
Alignment:
| Q |
19 |
acaaaagatggttttttattggttgatagtgtaaaatgttttatactaaaagtgtgtcaaaatgttttatactgtaagtgtgtcagaattattttcttct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52591599 |
acaaaagatggttttttattggttgatagtgtaaaatgttttatactaaaagtgtgtcaaaatgttttatactgtaagtgtgtcagaattattctcttct |
52591500 |
T |
|
| Q |
119 |
tctattccatagttagttattatgacagtgatggtttggctgattgtcgaatctgtaatcctttctttgtgctggttataggtagacaagagatacagac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52591499 |
tctattccatagttagttattatgacagtgatggtttggctgattgtcgaatctgtaatcctttctttgtgctggttataggtagacaagagatacagac |
52591400 |
T |
|
| Q |
219 |
agtactgccatcggatgcaaattgtggtgtcctctttggacatggttgctgggggtggagcagcagagccatatactacacttgcattgcgaacaatttc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52591399 |
agtactgccatcggatgcaaattgtggtgtcatctttggacatggttgctgggggtggagcagcagagccatatactacacttgcattgcgaacaatttc |
52591300 |
T |
|
| Q |
319 |
gcgtcagtttcgctgcttgcgtgatgctatcagcaaccaagttcaagtgattcaaaggaaccttggggaacaagaaggaatacctcgtctccggtacgtg |
418 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52591299 |
gcgtcagtttcgctgcttgcgcgatgctatcagcaaccaagttcaagtgattcaaaggaaccttggggaacaagaaggaatacctcgtctccggtacgtg |
52591200 |
T |
|
| Q |
419 |
gaccaacagcttaggcaacaaaaggcacttc |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
52591199 |
gaccaacagcttaggcaacaaaaggcacttc |
52591169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 201 - 441
Target Start/End: Complemental strand, 7302504 - 7302264
Alignment:
| Q |
201 |
tagacaagagatacagacagtactgccatcggatgcaaattgtggtgtcctctttggacatggttgctgggggtggagcagcagagccatatactacact |
300 |
Q |
| |
|
||||||| |||||| |||| ||||| |||| ||||| ||||| ||||| ||||| |||||||||||||| | || ||||| || ||||| ||| | || |
|
|
| T |
7302504 |
tagacaaaagataccgacaatactgtcatcaaatgcagattgttgtgtcatcttttgacatggttgctggttgcggcgcagccgaaccatacactgctct |
7302405 |
T |
|
| Q |
301 |
tgcattgcgaacaatttcgcgtcagtttcgctgcttgcgtgatgctatcagcaaccaagttcaagtgattcaaaggaaccttggggaacaagaaggaata |
400 |
Q |
| |
|
||| ||||| || ||||| ||||| |||||||| |||||||||||||| ||| |||| |||| ||| |||||||| |||||| |||||||| |||||| |
|
|
| T |
7302404 |
tgctttgcgcaccatttctcgtcactttcgctgtttgcgtgatgctattagcggccaaattcagttgactcaaaggagccttggtgaacaagagggaata |
7302305 |
T |
|
| Q |
401 |
cctcgtctccggtacgtggaccaacagcttaggcaacaaaa |
441 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||||| |
|
|
| T |
7302304 |
cctcgtctccgctatgttgatcaacagcttagacaacaaaa |
7302264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University