View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20418_low_3 (Length: 425)
Name: NF20418_low_3
Description: NF20418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20418_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 30047807 - 30048218
Alignment:
| Q |
1 |
atattgggattgggaaaatgatgaggttcaaagaagtnnnnnnntctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30047807 |
atattgggattgggaaaatgatgaggttcaaagaagtacaaaa-tctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
30047905 |
T |
|
| Q |
101 |
gatagctgaatctgattccccacttcttaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtgaatgaaccttctagttttgaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30047906 |
gatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaaccttctagttttgaagaa |
30048005 |
T |
|
| Q |
201 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30048006 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaa |
30048105 |
T |
|
| Q |
301 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaatacaaagcaaggcttgttgtgaaaagatattctcaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30048106 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaat |
30048205 |
T |
|
| Q |
401 |
ggctggaattgat |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30048206 |
ggctggaattgat |
30048218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 7160164 - 7160575
Alignment:
| Q |
1 |
atattgggattgggaaaatgatgaggttcaaagaagtnnnnnnntctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7160164 |
atattgggattggaaaaatgatgaggttcaaagaagtacagaa-tctgctgaaagtgctcatgacaaacaagaggacacaacaaatgaagatgaaaatca |
7160262 |
T |
|
| Q |
101 |
gatagctgaatctgattccccacttcttaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtgaatgaaccttctagttttgaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7160263 |
gatagctgaatctgattccccaattctaaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtgaattaaccttctagttttgaagaa |
7160362 |
T |
|
| Q |
201 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaa |
300 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7160363 |
gcttcattaataacataatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgagaactcactcaaagacctaaagataaaa |
7160462 |
T |
|
| Q |
301 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaatacaaagcaaggcttgttgtgaaaagatattctcaaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7160463 |
atgtgataggagttaaatgggtttacaaaaccaagttaaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaat |
7160562 |
T |
|
| Q |
401 |
ggctggaattgat |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7160563 |
ggctggaattgat |
7160575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 39951369 - 39950958
Alignment:
| Q |
1 |
atattgggattgggaaaatgatgaggttcaaagaagtnnnnnnntctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951369 |
atattgggattgggaaaattatgaggttcaaagaagtacaaaa-tctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
39951271 |
T |
|
| Q |
101 |
gatagctgaatctgattccccacttcttaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtgaatgaaccttctagttttgaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951270 |
gatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgtgaatgaaccttctagttttgaagaa |
39951171 |
T |
|
| Q |
201 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39951170 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaa |
39951071 |
T |
|
| Q |
301 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaatacaaagcaaggcttgttgtgaaaagatattctcaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39951070 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaat |
39950971 |
T |
|
| Q |
401 |
ggctggaattgat |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39950970 |
ggctggaattgat |
39950958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 45 - 413
Target Start/End: Complemental strand, 26220060 - 26219692
Alignment:
| Q |
45 |
tctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccacttcttaagagcaaatctctgg |
144 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| | |||||||||||||| |
|
|
| T |
26220060 |
tctgctgaaattgctcctgacaaacaagagcacataacaaatgaagatgaaaatcagatagctgaatttgattccccaattctaaggagcaaatctctgg |
26219961 |
T |
|
| Q |
145 |
ctgaagtttatgaaaa-ttgcaattttgttgtgaatgaaccttctagttttgaagaagcttcattgataacagaatggaaagatgcaatgaaggaggagc |
243 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
26219960 |
ctgaagtttatgaaaaattgcaattttgttgtgaataagccttctagttt-gaagaagtttcattgctaacagaatggaaagatgaaatgaaggaggagc |
26219862 |
T |
|
| Q |
244 |
tgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaaatgtgataggagttaaatgggtttacagaaccaagttaaatcc |
343 |
Q |
| |
|
| || | ||||||||||||||||| |||||||||||| |||||| || ||||||||||| |||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
26219861 |
tactaactattaataaaaatggtacttgggaactcacttcaagacccaatgataaaaatgtaatagatgttaaatgggtttatagaaccaagttaaatcc |
26219762 |
T |
|
| Q |
344 |
tgatggctccattcacaaatacaaagcaaggcttgttgtgaaaagatattctcaaatggctggaattgat |
413 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
26219761 |
tgatggttccattcacaaacacaaagcaaggcttgctgtgaaaggatattctcaaatgactggaattgat |
26219692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 198208 - 197797
Alignment:
| Q |
1 |
atattgggattgggaaaatgatgaggttcaaagaagtnnnnnnntctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198208 |
atattgggattgggaaaatgatgaggttcaaagaagtacaaaa-tctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
198110 |
T |
|
| Q |
101 |
gatagctgaatctgattccccacttcttaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtgaatgaaccttctagttttgaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
198109 |
gatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaaccttctagttttgaagaa |
198010 |
T |
|
| Q |
201 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198009 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaa |
197910 |
T |
|
| Q |
301 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaatacaaagcaaggcttgttgtgaaaagatattctcaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
197909 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaat |
197810 |
T |
|
| Q |
401 |
ggctggaattgat |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
197809 |
ggctggaattgat |
197797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 3944061 - 3944472
Alignment:
| Q |
1 |
atattgggattgggaaaatgatgaggttcaaagaagtnnnnnnntctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3944061 |
atattgggattgggaaaatgatgaggttcaaagaagtacaaaa-tctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
3944159 |
T |
|
| Q |
101 |
gatagctgaatctgattccccacttcttaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtgaatgaaccttctagttttgaagaa |
200 |
Q |
| |
|
|||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3944160 |
gatagctgaatctgattccctaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgagaatgaaccttctagttttgaagaa |
3944259 |
T |
|
| Q |
201 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3944260 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaa |
3944359 |
T |
|
| Q |
301 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaatacaaagcaaggcttgttgtgaaaagatattctcaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3944360 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaacacaaagcaaggcttgttgtgaaaggatattctcaaat |
3944459 |
T |
|
| Q |
401 |
ggctggaattgat |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3944460 |
ggctggaattgat |
3944472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 22363689 - 22364100
Alignment:
| Q |
1 |
atattgggattgggaaaatgatgaggttcaaagaagtnnnnnnntctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22363689 |
atattgggattgggaaaatgatgaggttcaaagaagtacaaaa-tctgctgaaagtgctcatgacaaacaagagcacacaacaaatgaagatgaaaatca |
22363787 |
T |
|
| Q |
101 |
gatagctgaatctgattccccacttcttaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtgaatgaaccttctagttttgaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22363788 |
gatagctgaatctgattccccaattctaaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtgaatgaaccttctagttttgaagaa |
22363887 |
T |
|
| Q |
201 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggtacatgggaactcactcaaagacctaaagataaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22363888 |
gcttcattgataacagaatggaaagatgcaatgaaggaggagctgctggccattaataaaaatggcacatgggaactcactcaaagacctaaagataaaa |
22363987 |
T |
|
| Q |
301 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggctccattcacaaatacaaagcaaggcttgttgtgaaaagatattctcaaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
22363988 |
atgtgataggagttaaatgggtttacagaaccaagttaaatcctgatggatccattcacaaacacaaaacaaggcttgttgtgaaaggatattctcaaat |
22364087 |
T |
|
| Q |
401 |
ggctggaattgat |
413 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
22364088 |
ggctagaattgat |
22364100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University