View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20418_low_4 (Length: 416)
Name: NF20418_low_4
Description: NF20418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20418_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Original strand, 15695759 - 15696149
Alignment:
| Q |
10 |
agatgaatatggtaaaacaatttttcagttaatatgtatagttgcctttaagccatactagggatgacatatctaatcatatctaagcttcatttagtaa |
109 |
Q |
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| T |
15695759 |
agatgaatatggtaaaacaatttttcagttaatatgtatagttgcctttaaaccatactagggatgacatatctaatcatatctaagcttcatttagtaa |
15695858 |
T |
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| Q |
110 |
tatttagattatcacataaagagaggcatgccaccattatatgttcattaagattattgtgttgcagtaattttcagcatgtttttgtgattgtaggaac |
209 |
Q |
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| T |
15695859 |
tatttagattatcacataaagagaggcatgccaccattatatgttcattaagattattgtgttgtagtaattttctgcatgtttttgtgattgtaggaac |
15695958 |
T |
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| Q |
210 |
attaagattatannnnnnnattcaatatttgatttatgtgatatatgttatacatgatatatgtttcatttgtgataacatggttaatgtacttgttaag |
309 |
Q |
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| T |
15695959 |
attaagattatatttttttattcaatatttgatttatgtgatatatgttatacatgatatatgtttcatttgtgataacatggttaatgtacttgttaag |
15696058 |
T |
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| Q |
310 |
tttgaagtgtttttatgttgataataccttttatttgttatcttaaggatgtttttgtactgtaagttttagtgaggtcattgattattat |
400 |
Q |
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| T |
15696059 |
tttgaagtgtttttatgttgataataccttttatttgttatcttaaggatgtttttgtagtgtaagttttagtgaggtcattgattattat |
15696149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 400
Target Start/End: Complemental strand, 12420219 - 12420053
Alignment:
| Q |
233 |
aatatttgatttatgtgatatatgttatacatgatatatgtttcatttgtgataacatggttaatgtacttgttaagtttgaagtgtttttatgttgata |
332 |
Q |
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| T |
12420219 |
aatattttatttatgtaagatatgtcatagatgatatatttttaatttgtaataacatagtta-tgtactcggtatgtttgaagcatttatatgttcgtg |
12420121 |
T |
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| Q |
333 |
ataccttttatttgttatcttaaggatgtttttgtactgtaagttttagtgaggtcattgattattat |
400 |
Q |
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| T |
12420120 |
atgcctattatatgttaacttaaggatgtttttatagtgtaggtttttgtgtgatcattgattattat |
12420053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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