View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20418_low_6 (Length: 327)

Name: NF20418_low_6
Description: NF20418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20418_low_6
NF20418_low_6
[»] chr1 (5 HSPs)
chr1 (65-253)||(1603773-1603961)
chr1 (271-315)||(13548810-13548854)
chr1 (284-315)||(11349018-11349049)
chr1 (284-315)||(37876585-37876616)
chr1 (262-315)||(13546894-13546947)
[»] chr2 (1 HSPs)
chr2 (262-315)||(45727245-45727298)
[»] chr6 (1 HSPs)
chr6 (271-315)||(26829927-26829971)
[»] chr7 (1 HSPs)
chr7 (286-315)||(34310535-34310564)
[»] chr8 (1 HSPs)
chr8 (271-315)||(42434797-42434841)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 65 - 253
Target Start/End: Complemental strand, 1603961 - 1603773
Alignment:
Q  65 tgaagagagattccattggaatttcgagaagccaaatgtgtatatagtacagtcctaactactagtttataacactcatcctctnnnnnnnttccacaat 164  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  1603961 tgaagagagattccattggaatttccagaagccaaatgtgtatatagtacagtcctaactactagtttataacactcatcctctaaaaaaaatccacaat 1603862  T
Q  165 aaagcggtcccattttggcatcaaagcgagtctcctatctaaatgtcatccattttataactttttaatgttaaagctaacaaacatcc 253  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1603861 aaagcggtcccattttggcattaaagcgagtcttgtatctaaatgtcatccattttataactttttaatgttaaacctaacaaacatcc 1603773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 13548810 - 13548854
Alignment:
Q  271 caaatttcccgctaatacaaactatatgatgtgtggagcaagtat 315  Q
    |||||||| | | ||||||||||||||||||||||||||||||||    
T  13548810 caaatttcacaccaatacaaactatatgatgtgtggagcaagtat 13548854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Complemental strand, 11349049 - 11349018
Alignment:
Q  284 aatacaaactatatgatgtgtggagcaagtat 315  Q
    ||||||||||||||||||||||||||||||||    
T  11349049 aatacaaactatatgatgtgtggagcaagtat 11349018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 315
Target Start/End: Original strand, 37876585 - 37876616
Alignment:
Q  284 aatacaaactatatgatgtgtggagcaagtat 315  Q
    ||||||||||||||||||||||||||||||||    
T  37876585 aatacaaactatatgatgtgtggagcaagtat 37876616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 13546894 - 13546947
Alignment:
Q  262 attcagtcacaaatttcccgctaatacaaactatatgatgtgtggagcaagtat 315  Q
    |||| ||| |||||||| | | |||||||||||||| |||||||||||||||||    
T  13546894 attcggtctcaaatttctcaccaatacaaactatataatgtgtggagcaagtat 13546947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 45727298 - 45727245
Alignment:
Q  262 attcagtcacaaatttcccgctaatacaaactatatgatgtgtggagcaagtat 315  Q
    |||||| | |||||||| | | ||||||||||||||||||||||||||||||||    
T  45727298 attcagactcaaatttcacaccaatacaaactatatgatgtgtggagcaagtat 45727245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 26829927 - 26829971
Alignment:
Q  271 caaatttcccgctaatacaaactatatgatgtgtggagcaagtat 315  Q
    |||||||| | | ||||||||||||||||||||||||||||||||    
T  26829927 caaatttcacaccaatacaaactatatgatgtgtggagcaagtat 26829971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Original strand, 34310535 - 34310564
Alignment:
Q  286 tacaaactatatgatgtgtggagcaagtat 315  Q
    ||||||||||||||||||||||||||||||    
T  34310535 tacaaactatatgatgtgtggagcaagtat 34310564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 42434797 - 42434841
Alignment:
Q  271 caaatttcccgctaatacaaactatatgatgtgtggagcaagtat 315  Q
    |||||||| | | |||||||||||||||||||| |||||||||||    
T  42434797 caaatttcacaccaatacaaactatatgatgtgaggagcaagtat 42434841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University