View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20418_low_7 (Length: 254)
Name: NF20418_low_7
Description: NF20418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20418_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 20542167 - 20541928
Alignment:
| Q |
15 |
taatactcctaataaccatctaatcatatcttcaataattgcatcatccaatctctagcattatcaatattctaaaatagtccttgctttacacaacatt |
114 |
Q |
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| T |
20542167 |
taatactcctaataaccatctaatcatatcttcaataattgcatcatccaatctctagcattatcaatattctaaaatagtccttgctttacacaacatt |
20542068 |
T |
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| Q |
115 |
tatcaatttggtccctctgttggtcttagtcacttaagagggctagacatactgatgtgtcacgctgatcatctctagactgtctctactctattgttat |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20542067 |
gatcaatttggtccctccgttggtcttagtcacttaagagggctagacatactgatgtgtcacgctgataatctctagactgtctctactctattgttat |
20541968 |
T |
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| Q |
215 |
cttcttctcctttcttccaatgatcaccacttcattttat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
20541967 |
cttcttctcctttcttccaatgatcaccacttcattttat |
20541928 |
T |
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