View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20419_high_4 (Length: 292)
Name: NF20419_high_4
Description: NF20419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20419_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 275
Target Start/End: Original strand, 10879718 - 10879985
Alignment:
| Q |
5 |
gaggagcagagatagactagggagaaaagcaaagaagatggcagtggatgtcaagtcattaatagacgagtcgaagtttgatggagtttcctatcagcaa |
104 |
Q |
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| T |
10879718 |
gaggaacagacatagactagggagaaaagcaaagaagatggcagtggatgtcaagttattaatagacgag---aagtttgatggagtttcctatcagcaa |
10879814 |
T |
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| Q |
105 |
aagccaacatctatgcatgctgatttgtttaatgatggctatgtagaatttccttccagaaaagatacaattaaaagcataatggaaaaactagaagatt |
204 |
Q |
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| T |
10879815 |
aagccaacatctatgcatgttgctttgtttaatgatggctatgtagaatttgcttctagaaaagatacaattaaaagcataatggaaaaactagaagatt |
10879914 |
T |
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| Q |
205 |
ctacagtgagaatgattggagtgcatgggccaggtggtgtgggtaagagcactttaatcaaagaaattgtt |
275 |
Q |
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| T |
10879915 |
ctacagtgagaatgattggagtgcatgggccaggtggtgtgggtaagagcactttaatcaaagaaattgtt |
10879985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 275
Target Start/End: Original strand, 10848322 - 10848592
Alignment:
| Q |
5 |
gaggagcagagatagactagggagaaaagcaaagaagatggcagtggatgtcaagtcattaatagacgagtcgaagtttgatggagtttcctatcagcaa |
104 |
Q |
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| T |
10848322 |
gaggaacagacatagactagggagaaaagcaaagaagatggcagtggatgtcaagttattaatagacgagtcgaagtttgatggagtttcctatcagcaa |
10848421 |
T |
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| Q |
105 |
aagccaacatctatgcatgctgatttgtttaatgatggctatgtagaatttccttccagaaaagatacaattaaaagcataatggaaaaactagaagatt |
204 |
Q |
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| T |
10848422 |
aagccaacatctatgcatgctgctttgtttaatgatggctatgtagaatttggttctagaacatgcacaattgaaaggataatggaaaaactagaagatt |
10848521 |
T |
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| Q |
205 |
ctacagtgagaatgattggagtgcatgggccaggtggtgtgggtaagagcactttaatcaaagaaattgtt |
275 |
Q |
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| T |
10848522 |
ctacagcgagaatgattggagtgcatgggccaggtggtgtgggtaagagcactttaatcaaagaaattgtt |
10848592 |
T |
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