View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20419_low_1 (Length: 373)

Name: NF20419_low_1
Description: NF20419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20419_low_1
NF20419_low_1
[»] chr5 (6 HSPs)
chr5 (131-357)||(328030-328256)
chr5 (129-175)||(19525346-19525392)
chr5 (129-175)||(19523995-19524041)
chr5 (129-175)||(27894081-27894127)
chr5 (129-175)||(41905187-41905233)
chr5 (134-175)||(12936160-12936201)
[»] chr8 (10 HSPs)
chr8 (129-175)||(31623918-31623964)
chr8 (129-175)||(24068342-24068388)
chr8 (129-175)||(36756076-36756122)
chr8 (129-175)||(38591065-38591111)
chr8 (129-175)||(41867974-41868020)
chr8 (129-175)||(43275762-43275808)
chr8 (129-175)||(43386760-43386806)
chr8 (134-175)||(31625442-31625483)
chr8 (134-175)||(36070195-36070236)
chr8 (134-175)||(37324746-37324787)
[»] chr6 (7 HSPs)
chr6 (129-175)||(31738375-31738421)
chr6 (129-175)||(5311291-5311337)
chr6 (129-175)||(8412374-8412420)
chr6 (129-175)||(33802075-33802121)
chr6 (134-175)||(8411103-8411144)
chr6 (134-175)||(22299961-22300002)
chr6 (135-175)||(31740330-31740370)
[»] chr4 (14 HSPs)
chr4 (129-175)||(37560357-37560403)
chr4 (134-175)||(37559015-37559056)
chr4 (134-173)||(54374012-54374051)
chr4 (129-175)||(11115038-11115084)
chr4 (129-171)||(23752028-23752070)
chr4 (129-175)||(30682732-30682778)
chr4 (129-175)||(33377422-33377468)
chr4 (129-175)||(39590953-39590999)
chr4 (129-175)||(40143666-40143712)
chr4 (134-175)||(38555334-38555375)
chr4 (134-175)||(43894122-43894163)
chr4 (135-172)||(44305040-44305077)
chr4 (143-175)||(5688695-5688727)
chr4 (135-175)||(44128392-44128432)
[»] chr3 (10 HSPs)
chr3 (129-175)||(41386142-41386188)
chr3 (129-175)||(41387491-41387537)
chr3 (134-175)||(39133034-39133075)
chr3 (129-175)||(8372674-8372720)
chr3 (129-175)||(17350160-17350206)
chr3 (129-175)||(42632718-42632764)
chr3 (129-175)||(51401409-51401455)
chr3 (134-175)||(8371237-8371278)
chr3 (134-175)||(10987711-10987752)
chr3 (129-174)||(42633945-42633990)
[»] chr2 (5 HSPs)
chr2 (129-175)||(23178940-23178986)
chr2 (129-175)||(23590197-23590243)
chr2 (129-175)||(37867768-37867814)
chr2 (134-175)||(35799529-35799570)
chr2 (135-175)||(11386642-11386682)
[»] chr1 (10 HSPs)
chr1 (129-175)||(25785980-25786026)
chr1 (129-175)||(25787222-25787268)
chr1 (129-175)||(13929307-13929353)
chr1 (129-175)||(13930733-13930779)
chr1 (129-175)||(44977233-44977279)
chr1 (129-175)||(48467273-48467319)
chr1 (134-175)||(13641274-13641315)
chr1 (129-173)||(38451564-38451608)
chr1 (135-175)||(47136745-47136785)
chr1 (129-173)||(49619879-49619923)
[»] chr7 (11 HSPs)
chr7 (134-175)||(45721824-45721865)
chr7 (129-173)||(29657001-29657045)
chr7 (129-173)||(43006397-43006441)
chr7 (129-175)||(4858402-4858448)
chr7 (129-175)||(19279670-19279716)
chr7 (134-175)||(4857218-4857259)
chr7 (134-175)||(22061853-22061894)
chr7 (134-175)||(40926577-40926618)
chr7 (135-175)||(22746378-22746418)
chr7 (135-175)||(25532164-25532203)
chr7 (129-173)||(29658673-29658717)
[»] scaffold0046 (1 HSPs)
scaffold0046 (129-175)||(23418-23464)
[»] scaffold0084 (1 HSPs)
scaffold0084 (134-175)||(13262-13303)
[»] scaffold2127 (1 HSPs)
scaffold2127 (135-175)||(573-613)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 131 - 357
Target Start/End: Complemental strand, 328256 - 328030
Alignment:
Q  131 tcacttaacttatttttagtattcaatttggtcccctaactataagatactcagcagtaatcccaccagtccattttaacatgaacttatgctcagaagc 230  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||    
T  328256 tcacttaacttattttttgttttcaatttggtcccctaactataagatactcagcagtagtctcaccagtccattttaacatgaacttatgctcataagc 328157  T
Q  231 tttgaaaacaaaatcattgggtaacacatggaaattacagagcttgtaggtagaattttctttaatgatcttttcatacatcgatttgtattttgttggg 330  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  328156 tttgaaaacaaaatcattgggtaacacatgaaaattacagagcttgtaggtataattttctttaatgatcttttcatacattgatttgtattttgttggg 328057  T
Q  331 acaatgacttgaatatcatttccctat 357  Q
    |||||||||||||||||||||||||||    
T  328056 acaatgacttgaatatcatttccctat 328030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 19525392 - 19525346
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||    
T  19525392 ggtcccttaacttatttttggttttcaatttggtcccctaactataa 19525346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 19523995 - 19524041
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||||||||||||| |||||||||    
T  19523995 ggtcccttaacttatttttggttttcaatttggtcccttaactataa 19524041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 27894127 - 27894081
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  27894127 ggtcgcttaacttattttttgttttcactttggtcccctaactataa 27894081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 41905187 - 41905233
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  41905187 ggtcccttaacttatttttggttttcattttggtcccctaactataa 41905233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 12936201 - 12936160
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  12936201 cttaacttatttttggttttcattttggtcccctaactataa 12936160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 31623918 - 31623964
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||    
T  31623918 ggtcccttaacttatttttggttttcaatttggtcccctaactataa 31623964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 24068342 - 24068388
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  24068342 ggtcccttaacttatttttggttttcattttggtcccctaactataa 24068388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 36756076 - 36756122
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||||||||||||||| || ||||||||||| |||||||||    
T  36756076 ggtcccttaacttatttttagtttttaatttggtcccataactataa 36756122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 38591111 - 38591065
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||||||||||||  | ||||||||||||||||||||||||    
T  38591111 ggtcccttaacttatttttgattttcaatttggtcccctaactataa 38591065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 41868020 - 41867974
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||| ||||||||||| |||| |||||||||||||||||||    
T  41868020 ggtcccttaatttatttttagttttcactttggtcccctaactataa 41867974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 43275762 - 43275808
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||| ||||||||||||    
T  43275762 ggtctcttaacttattttttgttttcaatttggttccctaactataa 43275808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 43386806 - 43386760
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  43386806 ggtcccttaacttatttttggttttcagtttggtcccctaactataa 43386760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 31625483 - 31625442
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||||||||||||||||| |||||    
T  31625483 cttaacttatttttggttttcaatttggtcccctaattataa 31625442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 36070195 - 36070236
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    ||||| |||||||| || ||||||||||||||||||||||||    
T  36070195 cttaatttatttttggttttcaatttggtcccctaactataa 36070236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 37324787 - 37324746
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || || |||||||||||||||||||||    
T  37324787 cttaacttatttttggtttttaatttggtcccctaactataa 37324746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 31738375 - 31738421
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||    
T  31738375 ggtcccttaacttatttttggttttcaatttggtcccctaactataa 31738421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 5311291 - 5311337
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||||||| |||||||||||||||    
T  5311291 ggtcccttaacttatttttggttttcaatttagtcccctaactataa 5311337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 8412420 - 8412374
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||||||| |||||||||||||||    
T  8412420 ggtcccttaacttattttttgttttcaatttagtcccctaactataa 8412374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 33802121 - 33802075
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  33802121 ggtcccttaacttatttttggttttcactttggtcccctaactataa 33802075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 8411103 - 8411144
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||||||| |||||||||||||||    
T  8411103 cttaacttatttttggttttcaatttagtcccctaactataa 8411144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 22300002 - 22299961
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  22300002 cttaacttatttttggttttcactttggtcccctaactataa 22299961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 31740370 - 31740330
Alignment:
Q  135 ttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  31740370 ttaacttattttttgttttcaatttggtcccttaactataa 31740330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 37560403 - 37560357
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||    
T  37560403 ggtcccttaacttatttttggttttcaatttggtcccctaactataa 37560357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 37559015 - 37559056
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  37559015 cttaacttatttttggttttcaatttggtcccctaactataa 37559056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 54374051 - 54374012
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactat 173  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  54374051 cttaacttattttcagttttcaatttggtcccctaactat 54374012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 11115084 - 11115038
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||||||||||| ||| |||| |||||||||||||||||||    
T  11115084 ggtcccttaacttattttcagttttcattttggtcccctaactataa 11115038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 23752028 - 23752070
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaact 171  Q
    |||| ||||||||||||||||  ||||||||||||||||||||    
T  23752028 ggtcccttaacttatttttagatttcaatttggtcccctaact 23752070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 30682732 - 30682778
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||||||||||||||| |||| ||||||||| |||||||||    
T  30682732 ggtcccttaacttatttttagttttcattttggtcccttaactataa 30682778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 33377468 - 33377422
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||||||||||||  | ||||||||||||||||||||||||    
T  33377468 ggtcccttaacttatttttgattttcaatttggtcccctaactataa 33377422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 39590953 - 39590999
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  39590953 ggtcccttaacttatttttggttttcactttggtcccctaactataa 39590999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 40143666 - 40143712
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||||||||||||||| |||| ||| |||||||||||||||    
T  40143666 ggtctcttaacttatttttagttttcattttagtcccctaactataa 40143712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 38555375 - 38555334
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  38555375 cttaacttatttttagtttttactttggtcccctaactataa 38555334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 43894122 - 43894163
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  43894122 cttaacttatttttggttttcagtttggtcccctaactataa 43894163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 44305077 - 44305040
Alignment:
Q  135 ttaacttatttttagtattcaatttggtcccctaacta 172  Q
    ||||||||||||| || |||||||||||||||||||||    
T  44305077 ttaacttattttttgttttcaatttggtcccctaacta 44305040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 5688727 - 5688695
Alignment:
Q  143 tttttagtattcaatttggtcccctaactataa 175  Q
    |||||||| ||||||||||||||||||||||||    
T  5688727 tttttagttttcaatttggtcccctaactataa 5688695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 44128432 - 44128392
Alignment:
Q  135 ttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||  | ||||||||||||||||||||||||    
T  44128432 ttaacttatttttcattttcaatttggtcccctaactataa 44128392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 41386142 - 41386188
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||    
T  41386142 ggtcccttaacttatttttggttttcaatttggtcccctaactataa 41386188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 41387537 - 41387491
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||    
T  41387537 ggtcccttaacttatttttggttttcaatttggtcccctaactataa 41387491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 39133034 - 39133075
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  39133034 cttaacttatttttggttttcaatttggtcccctaactataa 39133075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 8372720 - 8372674
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  8372720 ggtcccttaacttatttttggttttcattttggtcccctaactataa 8372674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 17350206 - 17350160
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||| ||||||||||||||    
T  17350206 ggtcccttaacttatttttggttttcaatttgttcccctaactataa 17350160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 42632718 - 42632764
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||||||| |||| || ||||||||||||||||||||||||    
T  42632718 ggtcccttaacttacttttggttttcaatttggtcccctaactataa 42632764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 51401455 - 51401409
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  51401455 ggtcccttaacttatttttggttttcactttggtcccctaactataa 51401409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 8371237 - 8371278
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  8371237 cttaacttattttttgttttcattttggtcccctaactataa 8371278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 10987752 - 10987711
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  10987752 cttaacttatttttggttttcattttggtcccctaactataa 10987711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 42633990 - 42633945
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactata 174  Q
    |||| ||||||||||||||  | |||||||||||||||||||||||    
T  42633990 ggtcccttaacttatttttgattttcaatttggtcccctaactata 42633945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 23178986 - 23178940
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||||    
T  23178986 ggtcccttaacttatttttagttttcactttggtcccctaactataa 23178940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 23590243 - 23590197
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||||    
T  23590243 ggtcccttaacttatttttagttttcactttggtcccctaactataa 23590197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 37867768 - 37867814
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||| ||||||||||||||    
T  37867768 ggtcccttaacttatttttggttttcaatttgatcccctaactataa 37867814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 35799529 - 35799570
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||||||| |||||||||||||||    
T  35799529 cttaacttatttttggttttcaatttagtcccctaactataa 35799570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 11386642 - 11386682
Alignment:
Q  135 ttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||||| || ||||||||||| |||||||||    
T  11386642 ttaacttatttttagtttttaatttggtcccttaactataa 11386682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 25785980 - 25786026
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||    
T  25785980 ggtcccttaacttatttttggttttcaatttggtcccctaactataa 25786026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 25787268 - 25787222
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||    
T  25787268 ggtcccttaacttatttttggttttcaatttggtcccctaactataa 25787222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 13929307 - 13929353
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||||||||||||| |||||||||    
T  13929307 ggtcccttaacttatttttggttttcaatttggtcccttaactataa 13929353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 13930779 - 13930733
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||||| ||||||||||    
T  13930779 ggtcccttaacttatttttggttttcaatttggtcctctaactataa 13930733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 44977233 - 44977279
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  44977233 ggtcccttaacttatttttggttttcactttggtcccctaactataa 44977279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 48467273 - 48467319
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || ||||||||||| ||||||||||||    
T  48467273 ggtcccttaacttattttttgttttcaatttggttccctaactataa 48467319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 13641274 - 13641315
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  13641274 cttaacttatttttggttttcactttggtcccctaactataa 13641315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 38451564 - 38451608
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactat 173  Q
    |||| |||||||||||||  || ||||||||||||||||||||||    
T  38451564 ggtcccttaacttattttatgttttcaatttggtcccctaactat 38451608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 47136785 - 47136745
Alignment:
Q  135 ttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    ||||||||||||| || ||||||| ||||||||||||||||    
T  47136785 ttaacttatttttggttttcaattaggtcccctaactataa 47136745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 49619923 - 49619879
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactat 173  Q
    |||| ||||| ||||||| ||| ||||||||||||||||||||||    
T  49619923 ggtcccttaatttattttcagttttcaatttggtcccctaactat 49619879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 45721865 - 45721824
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  45721865 cttaacttatttttagttttcattttggtcccctaactataa 45721824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 29657001 - 29657045
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactat 173  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||    
T  29657001 ggtcccttaacttattttcagttttcaatttggtcccctaactat 29657045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 43006397 - 43006441
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactat 173  Q
    |||| |||||||||||||| || ||||||||||||||||||||||    
T  43006397 ggtcccttaacttatttttggttttcaatttggtcccctaactat 43006441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 4858448 - 4858402
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| ||||||||||||||||| |||| |||| ||||||||||||||    
T  4858448 ggtcccttaacttatttttagttttcactttgatcccctaactataa 4858402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 19279716 - 19279670
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  19279716 ggtcccttaacttatttttggttttcactttggtcccctaactataa 19279670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 4857218 - 4857259
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  4857218 cttaacttatttttggttttcactttggtcccctaactataa 4857259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 22061894 - 22061853
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||  || ||||||||||||||||||||||||    
T  22061894 cttaacttattttgtgttttcaatttggtcccctaactataa 22061853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 40926618 - 40926577
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  40926618 cttaacttatttttggttttcactttggtcccctaactataa 40926577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 22746418 - 22746378
Alignment:
Q  135 ttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    ||||||||||||| || |||||||| |||||||||||||||    
T  22746418 ttaacttattttttgttttcaatttagtcccctaactataa 22746378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 25532164 - 25532203
Alignment:
Q  135 ttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  25532164 ttaacttattttttgt-ttcaatttggtcccctaactataa 25532203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 29658717 - 29658673
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactat 173  Q
    ||||| |||||||||||||||| |||||||| |||| ||||||||    
T  29658717 ggtcatttaacttatttttagttttcaatttagtcctctaactat 29658673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 23418 - 23464
Alignment:
Q  129 ggtcacttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||| |||||||||||||| || |||| |||||||||||||||||||    
T  23418 ggtcccttaacttatttttggttttcagtttggtcccctaactataa 23464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 13303 - 13262
Alignment:
Q  134 cttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    |||||||||||||| || |||| |||||||||||||||||||    
T  13303 cttaacttatttttggttttcagtttggtcccctaactataa 13262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2127 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2127
Description:

Target: scaffold2127; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 613 - 573
Alignment:
Q  135 ttaacttatttttagtattcaatttggtcccctaactataa 175  Q
    ||||||||||||| || ||||||| ||||||||||||||||    
T  613 ttaacttatttttggttttcaattaggtcccctaactataa 573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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