View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20419_low_5 (Length: 281)
Name: NF20419_low_5
Description: NF20419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20419_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 36724375 - 36724252
Alignment:
| Q |
23 |
acatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagat |
122 |
Q |
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| T |
36724375 |
acatcagaccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaatttagat |
36724276 |
T |
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| Q |
123 |
gcattatagatgcttgtagacagt |
146 |
Q |
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| T |
36724275 |
gcattatagatgcttgtagacagt |
36724252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 36723895 - 36723764
Alignment:
| Q |
133 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
232 |
Q |
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| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
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| Q |
233 |
cacataatactaactcccacacctatgatgat |
264 |
Q |
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| T |
36723795 |
cacataatactagctctcacacctatgatgat |
36723764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 712149 - 712314
Alignment:
| Q |
23 |
acatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagat |
122 |
Q |
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| T |
712149 |
acatcataccttcaatttgataatgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaatttggat |
712248 |
T |
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| Q |
123 |
gcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
188 |
Q |
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| T |
712249 |
gtattatacttgcatgtagatagttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 717359 - 717603
Alignment:
| Q |
23 |
acatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagat |
122 |
Q |
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|||||| ||||||||||||||||| |||||| ||||||||| | ||| | ||| |||||| |||||| | | || ||||| | |||||||| ||| |
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| T |
717359 |
acatcacaccttcaatttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttggat |
717458 |
T |
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| Q |
123 |
gcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagttagc |
221 |
Q |
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| T |
717459 |
gtattatagttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagttagc |
717558 |
T |
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| Q |
222 |
tcagatagtcccacataatactaactcccacacctatgatgatgt |
266 |
Q |
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||| |||| |||||||||| ||| || | ||| ||||||||||| |
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| T |
717559 |
tcatatagccccacataatgctagatctctcacttatgatgatgt |
717603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 14541083 - 14541248
Alignment:
| Q |
23 |
acatcagaccttcaatttgataatacagatttttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaatttagat |
122 |
Q |
| |
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|||||| ||||||||||||||||| | ||||||||||||||| | ||| |||||||||| |||||||| || |||||||| || ||||||||| |
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| T |
14541083 |
acatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaatttagat |
14541182 |
T |
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| Q |
123 |
gcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
188 |
Q |
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| T |
14541183 |
gtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
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