View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20419_low_7 (Length: 239)
Name: NF20419_low_7
Description: NF20419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20419_low_7 |
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| [»] scaffold0024 (3 HSPs) |
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| [»] scaffold0742 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 114196 - 114305
Alignment:
| Q |
128 |
atggctgcattttctgtatgttaccgaacaccttacaagaacacatgcatagttcttggcagagattctatatacaagaccgggacaaaattacgtgttc |
227 |
Q |
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| T |
114196 |
atggctgcattttcagtatgttacagaacaccttacaagaacacatgcatagtttttggcaaagattctatatacaagaccgcgacaaaattacgtgttc |
114295 |
T |
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| Q |
228 |
agtgttcatc |
237 |
Q |
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|||||||||| |
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| T |
114296 |
agtgttcatc |
114305 |
T |
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Target: scaffold0024; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 114073 - 114139
Alignment:
| Q |
5 |
ttggtaccaacacacctagtaaaaaggaaattcatttcaaatagtttctgagtttcaagacactgaa |
71 |
Q |
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| T |
114073 |
ttggtaccaacacacctagtaaaaaggaaattcatttcaaatagtttctgagtttcaagacactgaa |
114139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 120755 - 120853
Alignment:
| Q |
128 |
atggctgcattttctgtatgttaccgaacaccttacaagaacacatgcatagttcttggcagagattctatatacaagaccgggacaaaattacgtgtt |
226 |
Q |
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| T |
120755 |
atggctgcattttcagtatattacagaaaaccttacaaaaacacatgcatagttcttggcagagattttctgctcaagaccgcgacaaaattacgtgtt |
120853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0742 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0742
Description:
Target: scaffold0742; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 286 - 362
Alignment:
| Q |
144 |
tatgttaccgaacaccttacaagaacacatgcatagttcttggcagagattctatatacaagaccgggacaaaatta |
220 |
Q |
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| T |
286 |
tatgttacagaaaactttaaaaaaacatatgcatagttcttggcagagattttctgctcaagaccgcgacaaaatta |
362 |
T |
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