View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2041_high_2 (Length: 438)
Name: NF2041_high_2
Description: NF2041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2041_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 28616252 - 28615843
Alignment:
| Q |
18 |
caaaatggtgcacatcttccacattgtaatcagtattattgatttatctttagccattttgtaaacttgaagattcgaagtttattcttgtttttcaaaa |
117 |
Q |
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| T |
28616252 |
caaaatggtgcacatcttccacattgtaatcagtattattgatttatctttagccattttgtaaacttgaagatttgaagtttattcttgtttttcaaaa |
28616153 |
T |
|
| Q |
118 |
tccatatcaaccccataaagaatatgtcatattagtagtgtcattgtttttgtgatgtattgcaggtagcttgacgaagctcagttcacttacatttcta |
217 |
Q |
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| T |
28616152 |
tccatatcaaccccataaagaat--gtcatattagtagtgtcattgtttttgtgatgtattgcaggtagcttgacgaagctcagttcacttacatttcta |
28616055 |
T |
|
| Q |
218 |
accccgatgtttgcctcaatctttgggtaagactgcctaacagaggaaaagagttgcaggattttgaagtttctttttgttcttcgggaatatttagcag |
317 |
Q |
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| T |
28616054 |
accccgatgtttgcctcaatctttgggtaagactgcctaacagaggaaaagagttgcaggattttgaagtttctttttgttcttcgggaatatttagcag |
28615955 |
T |
|
| Q |
318 |
agagaataaaaatcagaaatacagctgatggttatatagtactttaaatgcaaagtctttcaggagaaaagtgaacatcttttacaattataattgtttt |
417 |
Q |
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| T |
28615954 |
agagaataaaaatcagaaatacagctgatggttatatagtactttaaatgcaaagtctttcaggagaaaagtgaccatcttttacaattataattgtttt |
28615855 |
T |
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| Q |
418 |
gaacagaataat |
429 |
Q |
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| T |
28615854 |
gaacagaataat |
28615843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 32 - 284
Target Start/End: Complemental strand, 28620170 - 28619920
Alignment:
| Q |
32 |
tcttccacattgtaatcagtattattgatttatctttagccattttgtaaacttgaagattcgaagtttattcttgtttttcaaaatccatatcaacccc |
131 |
Q |
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| T |
28620170 |
tcttcaacatggtaatcaatattattgatttatctttagccattttgtacctttacatatttgaactttatttttgtttttcaaaattcatatcaaccc- |
28620072 |
T |
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| Q |
132 |
ataaagaatatgtcatattagtagtgtcattgtttttgtgatgtattgcaggtagcttgacgaagctcagttcacttacatttctaaccccgatgtttgc |
231 |
Q |
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|||| ||||| ||||||| || || |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
28620071 |
ataa-gaatacaccatattattattgacattgtgcttgtgatgcattgcaggtagcttgacaaagctcagttcacttacatttctaaccccaatgtttgc |
28619973 |
T |
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| Q |
232 |
ctcaatctttgggtaagactgcctaacagaggaaaagagttgcaggattttga |
284 |
Q |
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|||||| || |||||||||||||||||| || |||||||||| || |||||| |
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| T |
28619972 |
ctcaattttcgggtaagactgcctaacaatgggaaagagttgccgggttttga |
28619920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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