View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2041_high_3 (Length: 416)
Name: NF2041_high_3
Description: NF2041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2041_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 28 - 406
Target Start/End: Original strand, 18893895 - 18894273
Alignment:
| Q |
28 |
attgtgataatctattataagagctagaatacaagaagtgacttttgtaataaattgatatgaatttggtccatgttgaactagctagagaacataaata |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18893895 |
attgtgataatctattataagagctagaatacaagaagtgacttttgtaataaattgatatgaatttggtccatgttgaactagctagagaacattcata |
18893994 |
T |
|
| Q |
128 |
gttctgtcaaatactatgcaattgggccaaaaccacttagcccagaatgttgctaaaaccaaagcatgaatttagtgagctcatagtggtatttagatcg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18893995 |
gttctgtcaaatactatgcaattgggccaaaaccacttagcccagaatgttgctaaaaccaaagcatgaatttagtgagctcatagtggtatttagatcg |
18894094 |
T |
|
| Q |
228 |
ttgaccaaaaatacgatggtggtatttattattattagagttcttaaatattgtatgacggccatatgcttatgtttatccaaagtttaattttcttttg |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18894095 |
-tgaccaaaaatacgatggtggtatttattattattagagttcttaaatattgtatgacggccatatgcttatgtttatccaaagtttaattttcttttg |
18894193 |
T |
|
| Q |
328 |
ttatgaaactgtatctcaaaaataaacataatttttctggttatttttatcaagtcataatttg-ttttttgttgttgtt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18894194 |
ttatgaaactgtatctcaaaaataaacataatttttctggttatttttatcaagtcataatttgtttttttgttgttgtt |
18894273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University