View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2041_low_1 (Length: 443)
Name: NF2041_low_1
Description: NF2041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2041_low_1 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 33049687 - 33049978
Alignment:
| Q |
16 |
aatatgttcttgatgttgtgaacgatattataccaacacttgcaagaaacacaactgaggttcaacaaactgcaaacaaagatacgaagaagaaacatgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33049687 |
aatatgttcttgatgttgtgaacgatattataccaacacttgcaagaaacgcaactgaggttcaacaaactgcaaacaaagatacgaagaagaaacatgg |
33049786 |
T |
|
| Q |
116 |
aaatgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagaga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33049787 |
aaatgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagaga |
33049886 |
T |
|
| Q |
216 |
ttgtattatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtg |
308 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
33049887 |
ttgtattatggatataaaaaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatg-tgaatatggaggatggtgaatatgtg |
33049978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 427
Target Start/End: Original strand, 9504236 - 9504504
Alignment:
| Q |
159 |
tttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattgtattatggatatgaaaaattgaagaaagtgaggcttcaag |
258 |
Q |
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||||||||||| |||| || ||||| | ||| || || || |||||| | |||| |||||||||||| ||| || |||||||| ||||| |||||| |
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| T |
9504236 |
tttgagaagatcatgcattatgaaagcgtgaaggagacatgggatacattagagaaattgtattatggtgatggtaagttgaagaaggtgagacttcaac |
9504335 |
T |
|
| Q |
259 |
cattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaa |
358 |
Q |
| |
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| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | ||||| |||||||||||| ||| || |
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| T |
9504336 |
ctttgagaagacagtatgaagtgttgacaatggaagaagaagaatctgttagtcaatactttgataaggtgatcaatcttacaaatcagatgacaaggaa |
9504435 |
T |
|
| Q |
359 |
taatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatca |
427 |
Q |
| |
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| ||| || ||||||| |||||||| | ||||||||||||| || || ||| ||||||||||||| |
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| T |
9504436 |
tggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcaaaaccttaacatcaagatttgatca |
9504504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 28452612 - 28452357
Alignment:
| Q |
19 |
atgttcttgatgttgtgaacgatattataccaacacttgcaagaaacacaactgaggttcaacaaactgcaaacaaagatacgaagaagaaacatggaaa |
118 |
Q |
| |
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|||||||||||| || ||| ||| | |||||| ||||||||||||||||| ||||||||||||| || | | |||||| ||||||| ||| |||| || |
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| T |
28452612 |
atgttcttgatgctgcgaaggatggtctaccaatgcttgcaagaaacacaacagaggttcaacaaattggacataaagatgcgaagaaaaaagatgggaa |
28452513 |
T |
|
| Q |
119 |
tgcaatgtttctcattcactagtgtgtgaatagtgatatttttgagaagattatgcgttgtgaaaatgcgaaagaaacttgagatacacttgagagattg |
218 |
Q |
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||||||||||||||||||| |||| ||| ||| ||||| |||||||| |||| |||||||||||||| |||||||||||||| || |||| ||| |
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| T |
28452512 |
atcaatgtttctcattcactatggtgttaatgatgagattttggagaagatcatgcactgtgaaaatgcgaaggaaacttgagatactattaagaggttg |
28452413 |
T |
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| Q |
219 |
tattatggatatgaaaaattgaagaaagtgaggcttcaagcattaagaaaacaata |
274 |
Q |
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|||| |||| ||| ||| |||||||| ||| | |||||||||||||| | |||||| |
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| T |
28452412 |
tattctggagatggaaagttgaagaaggtgggacttcaagcattaaggagacaata |
28452357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 237 - 427
Target Start/End: Complemental strand, 45496521 - 45496331
Alignment:
| Q |
237 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
336 |
Q |
| |
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|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||||||| ||||||||||||||||| || | |||| |
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| T |
45496521 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc |
45496422 |
T |
|
| Q |
337 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatca |
427 |
Q |
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|| |||||||||||||||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| |
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| T |
45496421 |
taacaaatcagatgataaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatca |
45496331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 237 - 427
Target Start/End: Complemental strand, 45504263 - 45504073
Alignment:
| Q |
237 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
336 |
Q |
| |
|
|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||||||| ||||||||||||||||| || | |||| |
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| T |
45504263 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatatgttagtcaatactttgataaggtgatcaatc |
45504164 |
T |
|
| Q |
337 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatca |
427 |
Q |
| |
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|| |||||||||||||||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| |
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| T |
45504163 |
taacaaatcagatgataaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatca |
45504073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 427
Target Start/End: Complemental strand, 21793958 - 21793768
Alignment:
| Q |
237 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
336 |
Q |
| |
|
|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | |||| |
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| T |
21793958 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatttgttagtcaatactttgataaggtgatcaatc |
21793859 |
T |
|
| Q |
337 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatca |
427 |
Q |
| |
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| |||||||||||| ||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||||||||||||| |
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| T |
21793858 |
ttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaagatttgatca |
21793768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 427
Target Start/End: Original strand, 5984098 - 5984288
Alignment:
| Q |
237 |
ttgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtgaatc |
336 |
Q |
| |
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|||||||| ||||| |||||||| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | |||| |
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| T |
5984098 |
ttgaagaaggtgagacttcaagctttgagaagacagtatgaagtgttgacaatggaagaagaagaatctgttagtcaatactttgataaggtgctcaatc |
5984197 |
T |
|
| Q |
337 |
tagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatca |
427 |
Q |
| |
|
| |||||||||||| ||| |||| ||| || ||||||| |||||||| | ||||| ||||||| || || ||| ||||||||||||| |
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|
| T |
5984198 |
ttacaaatcagatgacaaggaatagtgaaactgtcactgatgtgatgaaggtggaaaaagttctcataaccttaacatcaagatttgatca |
5984288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 300 - 427
Target Start/End: Original strand, 61808 - 61934
Alignment:
| Q |
300 |
gaatatgtgagtcaatactttgataaactggtgaatctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttc |
399 |
Q |
| |
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|||||||| ||||||||||||||||| || | ||||| |||||||||||| ||| ||| ||| || |||||||| |||||||| | |||||||||| |
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| T |
61808 |
gaatatgttagtcaatactttgataaggtg-tcaatcttacaaatcagatgacaaggaatggtgaaactatcactgatgtgatgaaggtggaaaaggttc |
61906 |
T |
|
| Q |
400 |
tcagaattttgacaccaagatttgatca |
427 |
Q |
| |
|
||||||| ||||| ||||||||||||| |
|
|
| T |
61907 |
tcagaatcgtgacatcaagatttgatca |
61934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 427
Target Start/End: Complemental strand, 16847339 - 16847146
Alignment:
| Q |
234 |
aaattgaagaaagtgaggcttcaagcattaagaaaacaatacgagatgctgaatatggaggaaggtgaatatgtgagtcaatactttgataaactggtga |
333 |
Q |
| |
|
||||||||||| ||||| || ||||| || |||| ||| || || || ||| ||||| |||| |||| ||| ||||||||||||||||| || | | |
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|
| T |
16847339 |
aaattgaagaaggtgagactgcaagctttgagaagacattatgaagtgttgacaatggaagaagaagaatttgttagtcaatactttgataaggtgatca |
16847240 |
T |
|
| Q |
334 |
atctagcaaatcagatgataagaaataatgatacaatcactgaattgatgaagttagaaaaggttctcagaattttgacaccaagatttgatca |
427 |
Q |
| |
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|||| |||||||||||| ||| ||| ||| || ||||||| |||||||| | |||||||||||||||| || ||| ||| ||||||||| |
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|
| T |
16847239 |
atcttacaaatcagatgacaaggaatggtgaaactgtcactgatgtgatgaaggtggaaaaggttctcagaaccttaacatcaaaatttgatca |
16847146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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