View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2041_low_10 (Length: 240)

Name: NF2041_low_10
Description: NF2041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2041_low_10
NF2041_low_10
[»] chr5 (3 HSPs)
chr5 (63-225)||(43383984-43384150)
chr5 (1-39)||(25870575-25870613)
chr5 (1-39)||(43383905-43383943)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 43383984 - 43384150
Alignment:
Q  63 tcactcttgatttgaggttgggactttaattaattaatttcttcttctttactcttctaatatatattttactacttagttaagttattaggtcatc--- 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       
T  43383984 tcactcttgatttgaggttgggactttaattaattaatttcttcttctttactcttctaatatatattttactacttaattaagttattaggtcatcatc 43384083  T
Q  160 -atcaccgttgctcatgtatgtttcattttatttgcatcctaattctaattacccctcttatttcat 225  Q
     ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  43384084 gatcaccgttgctcatgtttgtttcattttatttgcaccctaattctaattacctctcttatttcat 43384150  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25870575 - 25870613
Alignment:
Q  1 acaccaacactaccatttgatttgaatttcccttttcca 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25870575 acaccaacactaccatttgatttgaatttcccttttcca 25870613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43383905 - 43383943
Alignment:
Q  1 acaccaacactaccatttgatttgaatttcccttttcca 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43383905 acaccaacactaccatttgatttgaatttcccttttcca 43383943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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