View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2041_low_11 (Length: 239)
Name: NF2041_low_11
Description: NF2041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2041_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 26079458 - 26079568
Alignment:
| Q |
18 |
ctattcagaaatgggtttgtttgcttaataaaatttactgttgtaaatgcaatca---annnnnnnnggtgaattaaattcaatcatttcaattccgaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |||| || |
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| T |
26079458 |
ctattcagaaatgggtttgtttgcttaataaaatctattgttgtaaatgcaatcattttttttttttggtgaattaaattcaatcatttcaactccgcaa |
26079557 |
T |
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| Q |
115 |
attttctcctg |
125 |
Q |
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||||||||||| |
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| T |
26079558 |
attttctcctg |
26079568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 26103245 - 26103355
Alignment:
| Q |
18 |
ctattcagaaatgggtttgtttgcttaataaaatttactgttgtaaatgcaatca---annnnnnnnggtgaattaaattcaatcatttcaattccgaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |||| || |
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| T |
26103245 |
ctattcagaaatgggtttgtttgcttaataaaatctattgttgtaaatgcaatcattttttttttttggtgaattaaattcaatcatttcaactccgcaa |
26103344 |
T |
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| Q |
115 |
attttctcctg |
125 |
Q |
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||||||||||| |
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| T |
26103345 |
attttctcctg |
26103355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 26079637 - 26079672
Alignment:
| Q |
195 |
gtaagtcttgcactgtttatgaaagcaaagaataat |
230 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
26079637 |
gtaagtcctgcactgtttatgaaagcaaagaataat |
26079672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 26103424 - 26103459
Alignment:
| Q |
195 |
gtaagtcttgcactgtttatgaaagcaaagaataat |
230 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
26103424 |
gtaagtcctgcactgtttatgaaagcaaagaataat |
26103459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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