View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2041_low_12 (Length: 224)
Name: NF2041_low_12
Description: NF2041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2041_low_12 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36107764 - 36107987
Alignment:
| Q |
1 |
ttatacttgacatgtttcatttcaattcagttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36107764 |
ttatacttgacatgtttcatctcaattcagttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataa |
36107863 |
T |
|
| Q |
101 |
cattgcaaataaaagcaacaagcttgctttcccatctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36107864 |
cattgcaaataaaagcaacaagcttgctttcccatctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatg |
36107963 |
T |
|
| Q |
201 |
agaaaatttggtctttctgttgat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36107964 |
agaaaatttggtctttctgttgat |
36107987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 34971878 - 34971658
Alignment:
| Q |
4 |
tacttgacatgtttcatttcaattcagttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataacat |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34971878 |
tacttgacatgtttcacctcaattcagttgatgtcaatttacaagaatcaacaacatgggttgaatcaggtgcaacacttggtaagatttattatacaat |
34971779 |
T |
|
| Q |
104 |
tgcaaataaaagcaacaagcttgctttcccatctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgaga |
203 |
Q |
| |
|
|| |||||||| ||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
34971778 |
tggaaataaaaacaattcttttgcttttccatccggggtctgttttactgtaggtgctggtggtcatttttctggtggtggttatggaaatttgatgaga |
34971679 |
T |
|
| Q |
204 |
aaatttggtctttctgttgat |
224 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
34971678 |
aaatttggtctttctattgat |
34971658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 36100505 - 36100728
Alignment:
| Q |
1 |
ttatacttgacatgtttcatttcaattcagttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataa |
100 |
Q |
| |
|
||||| ||||| || |||| ||||||||||||| ||||||||||||| |||| ||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
36100505 |
ttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaacatgggttgaagctggtgcaacacttggtaagatttattatac |
36100604 |
T |
|
| Q |
101 |
cattgcaaataaaagcaacaagcttgctttcccatctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatg |
200 |
Q |
| |
|
|||| |||| |||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36100605 |
catttcaaagaaaaataattctcttgctttcccatctggggtctgtttttctctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatg |
36100704 |
T |
|
| Q |
201 |
agaaaatttggtctttctgttgat |
224 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
36100705 |
agaaaatttggtctttctattgat |
36100728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 21482496 - 21482719
Alignment:
| Q |
1 |
ttatacttgacatgtttcatttcaattcagttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataa |
100 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
21482496 |
ttataattgacttgcttcatctcaattcagttgatgtcaatttacaagaagaaacagcatgggttgaatcaggtgcaacacttggaaagctttattatac |
21482595 |
T |
|
| Q |
101 |
cattgcaaataaaagcaacaagcttgctttcccatctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatg |
200 |
Q |
| |
|
||||| ||| |||| ||| |||||||||||||| || || |||||| || | || |||||||||||||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
21482596 |
cattggaaagaaaaataactctcttgctttcccatccggcgtttgtttttctgtcggagctggtggtcatttttctggtggtggatatggaaatatgatg |
21482695 |
T |
|
| Q |
201 |
agaaaatttggtctttctgttgat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
21482696 |
agaaaatttggtctttctgttgat |
21482719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36090571 - 36090348
Alignment:
| Q |
1 |
ttatacttgacatgtttcatttcaattcagttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataa |
100 |
Q |
| |
|
||||| ||||| || ||||| |||||||| ||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36090571 |
ttataattgacttgcttcatctcaattcaattgatgtcaatttagaagaagaaactgcatgggttgaatcaggtgcaatacttggtaagatttattatac |
36090472 |
T |
|
| Q |
101 |
cattgcaaataaaagcaacaagcttgctttcccatctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatg |
200 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||||||| |||||| | |||| |||||||| || || ||| ||| |||| |||| || || ||| |
|
|
| T |
36090471 |
gattgcaatgaaaaataactcccttgctttcccatctggggtatgtttttcggtaggggctggtggccaattatctagtgctgggcatggaaacttaatg |
36090372 |
T |
|
| Q |
201 |
agaaaatttggtctttctgttgat |
224 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
36090371 |
agaaaatttggtctttctattgat |
36090348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 224
Target Start/End: Original strand, 36079952 - 36080123
Alignment:
| Q |
53 |
aacagcatgggttgaatcaggtgcaacacttggtaagatttattataacattgcaaataaaagcaacaagcttgctttcccatctggggtctgttttact |
152 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| || || | | |||||| ||| ||||||| ||| ||| |
|
|
| T |
36079952 |
aacagcatgggttgaagcaggtgcaacacttggtaaggtttattattacattgcaaagaagagtcaagttcatgcttttccagctggggtgtgtcctaca |
36080051 |
T |
|
| Q |
153 |
ctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgat |
224 |
Q |
| |
|
||| | ||||||||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
36080052 |
gtagctactggtggtcatttttcaggtggtggttatggtaatttaatgagaaaatttggtctatctgttgat |
36080123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6838525 - 6838748
Alignment:
| Q |
1 |
ttatacttgacatgtttcatttcaattcagttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6838525 |
ttatacttgacatgtttcatctcaattctgttgatgtcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattatac |
6838624 |
T |
|
| Q |
101 |
cattgcaaataaaagcaacaagcttgctttcccatctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatg |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6838625 |
cattgcaaagaaaagcaacaagcttgctttcccatctggggtgtgctttactgtaggtgctggtggtcatttctctggtggtgggtatggaaatttgatg |
6838724 |
T |
|
| Q |
201 |
agaaaatttggtctttctgttgat |
224 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
6838725 |
agaaaatttggtctttctattgat |
6838748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8338389 - 8338612
Alignment:
| Q |
1 |
ttatacttgacatgtttcatttcaattcagttgatatcaatttacaagaatcaacagcatgggttgaatcaggtgcaacacttggtaagatttattataa |
100 |
Q |
| |
|
||||| ||||| || |||| |||||||||||||| ||||||||||||| ||| |||||||||||||| ||||||||| | |||||||||||||||| |
|
|
| T |
8338389 |
ttataattgacctgcttcacctcaattcagttgatctcaatttacaagatgaaactgcatgggttgaatctggtgcaacaatcggtaagatttattatac |
8338488 |
T |
|
| Q |
101 |
cattgcaaataaaagcaacaagcttgctttcccatctggggtctgttttactctaggtgctggtggtcatttctctggtggtgggtatggtaatttgatg |
200 |
Q |
| |
|
||||||||| |||| ||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
8338489 |
cattgcaaagaaaaacaattctcttgctttcccgtctggggtctgttctacactaggtgctggtggtcatttttcgggtggtgggtatggaaatttgatg |
8338588 |
T |
|
| Q |
201 |
agaaaatttggtctttctgttgat |
224 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
8338589 |
agaaagtttggtctttctgttgat |
8338612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 11933730 - 11933778
Alignment:
| Q |
176 |
tggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgat |
224 |
Q |
| |
|
||||||||| |||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
11933730 |
tggtggtggatatggtaacatgatgagaaaatatggtctttcagttgat |
11933778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 11946951 - 11946999
Alignment:
| Q |
176 |
tggtggtgggtatggtaatttgatgagaaaatttggtctttctgttgat |
224 |
Q |
| |
|
||||||||| |||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
11946951 |
tggtggtggatatggtaacatgatgagaaaatatggtctttcagttgat |
11946999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University