View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2041_low_13 (Length: 203)

Name: NF2041_low_13
Description: NF2041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2041_low_13
NF2041_low_13
[»] chr7 (11 HSPs)
chr7 (25-190)||(4636533-4636698)
chr7 (18-92)||(4784088-4784162)
chr7 (18-92)||(4816517-4816591)
chr7 (40-130)||(4712350-4712437)
chr7 (52-121)||(4846299-4846365)
chr7 (52-101)||(4643445-4643494)
chr7 (41-101)||(4672435-4672495)
chr7 (40-92)||(4863690-4863742)
chr7 (55-101)||(4666694-4666740)
chr7 (41-87)||(4697466-4697512)
chr7 (37-87)||(4630700-4630750)
[»] chr4 (1 HSPs)
chr4 (44-101)||(18926021-18926078)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 3e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 4636698 - 4636533
Alignment:
Q  25 atgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgctggtttgaatcccaacaaacaca 124  Q
    |||||||| || ||||||||||| |   | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4636698 atgcctacagtatatcgtgatgttattcttaatggaatcgagattttcaaaattagtgataaatataacaatctcgctggtttgaatcccaacaaacaca 4636599  T
Q  125 ttatactttcatctaaaaaatcaaagtccaagaagtcaaccatagtcatagttggagtttcatctc 190  Q
    ||||||| |||||| |||||  ||||||||||||||||||  ||||||||||||||||||||||||    
T  4636598 ttatactatcatctcaaaaacaaaagtccaagaagtcaactgtagtcatagttggagtttcatctc 4636533  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 4784088 - 4784162
Alignment:
Q  18 aaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatataa 92  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  4784088 aaaacctatgcctacggtatatcgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaataa 4784162  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 4816517 - 4816591
Alignment:
Q  18 aaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatataa 92  Q
    |||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  4816517 aaaacctatgccttcggtatatcgtgatgtcacgttgaatggaattgagattttgaaaataagtgataaaaataa 4816591  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 4712350 - 4712437
Alignment:
Q  40 cgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgctggtttgaatcccaacaaacacattatac 130  Q
    ||||||||||   |||||||||| |||||||| ||||||||||||||| ||||   |||||||||||||||||||| ||||||||||||||    
T  4712350 cgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataa---tctcgctggtttgaatcccatcaaacacattatac 4712437  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 4846299 - 4846365
Alignment:
Q  52 ttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgctggtttgaatcccaacaaac 121  Q
    |||||||||||||||||||| ||| |||||||||||   |||||||| |||||| |||||||||||||||    
T  4846299 ttgaatggaatcgagattttcaaagtaagtgataaa---aacaatctggctggtatgaatcccaacaaac 4846365  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 4643494 - 4643445
Alignment:
Q  52 ttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgc 101  Q
    |||||||||||||||||||| ||||||||||| ||| |||||||||||||    
T  4643494 ttgaatggaatcgagattttaaaaataagtgacaaaaataacaatctcgc 4643445  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 4672495 - 4672435
Alignment:
Q  41 gtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgc 101  Q
    |||||||||| || ||||||||||||||||| ||| ||||||||||| |||| ||||||||    
T  4672495 gtgatgtcacattaaatggaatcgagattttcaaagtaagtgataaaaataataatctcgc 4672435  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 4863742 - 4863690
Alignment:
Q  40 cgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaatataa 92  Q
    |||||||| ||||||||||||||||||||||| |||||||| |||||| ||||    
T  4863742 cgtgatgttacgttgaatggaatcgagatttttaaaataagcgataaaaataa 4863690  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 4666740 - 4666694
Alignment:
Q  55 aatggaatcgagattttgaaaataagtgataaatataacaatctcgc 101  Q
    ||||||||||||||||| ||||||||||| ||| |||||||||||||    
T  4666740 aatggaatcgagattttaaaaataagtgacaaaaataacaatctcgc 4666694  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 4697466 - 4697512
Alignment:
Q  41 gtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaa 87  Q
    |||||||||| |||||||| ||||||||||||||||||| |||||||    
T  4697466 gtgatgtcacattgaatggcatcgagattttgaaaataaatgataaa 4697512  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 4630750 - 4630700
Alignment:
Q  37 tatcgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaa 87  Q
    ||||||||||||  | |||||||||| |||||||| |||||||||||||||    
T  4630750 tatcgtgatgtcctgctgaatggaattgagattttcaaaataagtgataaa 4630700  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 18926021 - 18926078
Alignment:
Q  44 atgtcacgttgaatggaatcgagattttgaaaataagtgataaatataacaatctcgc 101  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||| |||||||||||||    
T  18926021 atgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataacaatctcgc 18926078  T

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