View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2041_low_4 (Length: 406)
Name: NF2041_low_4
Description: NF2041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2041_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 28844211 - 28844404
Alignment:
| Q |
5 |
ggtagattatactaagcatactcacgaagatgtatatgtttcttatcatttttctattaatgtagttttttctttatcaaggtaaaggccattttataag |
104 |
Q |
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| T |
28844211 |
ggtagattatactaagcatactcacgaagatgtatatgtttcttataatttttctattaatgtagttttttctttatcaaggtaaaggccattttataag |
28844310 |
T |
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| Q |
105 |
ttaatttnnnnnnnttctttcaacgctaatgttgttgttatacattgcggaggaaactttatttctttttttaaagtgcacgatgctcatgtgtt |
199 |
Q |
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| T |
28844311 |
ttaattt-aaaaaattctttcaacgctaatgttgttgttatacattgcggaggaaactttttttttttttttcaagtgcacgatgctcatgtgtt |
28844404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 243 - 390
Target Start/End: Original strand, 28844428 - 28844575
Alignment:
| Q |
243 |
ccacatcgttatactttgtgatggactagctcgtaaaatttatcatttcctttctttcaaacacttatatatgtttataccaaaagataattcaaattta |
342 |
Q |
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| T |
28844428 |
ccacatcgttatactttgtgatggactagctcgtaaaatttatcatttcctttctttcaaacacttgtatatgtttataccaaaagataatttaaattta |
28844527 |
T |
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| Q |
343 |
attcaaacacatccttatattgtataggtacgcatggccctcaaacat |
390 |
Q |
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| T |
28844528 |
attcaaacacatccttatattgtataggtacgcatggccctcaaacat |
28844575 |
T |
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