View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2041_low_5 (Length: 367)
Name: NF2041_low_5
Description: NF2041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2041_low_5 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 51807472 - 51807813
Alignment:
| Q |
1 |
agtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807472 |
agtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttcctt |
51807571 |
T |
|
| Q |
101 |
gacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcgaaca |
200 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51807572 |
gac---agatgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacata----gagtgctttattgtttcaggtttaacaaattcgaaca |
51807664 |
T |
|
| Q |
201 |
agaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807665 |
agaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggta |
51807764 |
T |
|
| Q |
301 |
taatatacgaaaaccattttccatttctgtgtagtatctatatcagctt |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807765 |
taatatacgaaaaccattttccatttctgtgtagtatctatatcagctt |
51807813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 51779769 - 51780046
Alignment:
| Q |
1 |
agtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttcctt |
100 |
Q |
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||||||||| |||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51779769 |
agtttcaaagttcgataaacagatacatacttgattctgcctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcttttcctt |
51779868 |
T |
|
| Q |
101 |
gacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcgaaca |
200 |
Q |
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|||||||||||||||||||| ||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51779869 |
gacgacagacgaatcatgaacatctaatttcgctaggtattgaatgttttacca----atatagagtgctttattgtttcaggtttaacaaattcaaaca |
51779964 |
T |
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| Q |
201 |
agaaaagactt----gctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact |
274 |
Q |
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||||||| ||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
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| T |
51779965 |
agaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact |
51780046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 51771896 - 51772170
Alignment:
| Q |
1 |
agtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttcctt |
100 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
51771896 |
agttccaaaattccgttaacagatacttacttgattctacctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcatttcctt |
51771995 |
T |
|
| Q |
101 |
gacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgcttt--attgtttcaggtttaacaaattcgaa |
198 |
Q |
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|| |||||||||||||| ||| | | ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
51771996 |
tac---agacgaatcatgaaaatcgatct-------gtattgatggttttaccaa----tatagagtgctttttattgtttcaggtttaacaaattcgaa |
51772081 |
T |
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| Q |
199 |
caagaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcc |
287 |
Q |
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||||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
51772082 |
caagaaaaggcttgctagaaaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttcc |
51772170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 51803793 - 51803853
Alignment:
| Q |
215 |
aggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagactt |
275 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
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| T |
51803793 |
aggaaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagactt |
51803853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 51803593 - 51803689
Alignment:
| Q |
3 |
tttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttcct |
99 |
Q |
| |
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|||||||| || |||||||||||||||||| ||||||| |||||||||| ||| | || |||| || |||| ||||||||| ||||| ||||||| |
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| T |
51803593 |
tttcaaaaatcagttaacagatacttacttgattctgccactcatcaatgtcaactttcaaccaaacaacaaaacaaaagtaaaactttattttcct |
51803689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 6411 - 6688
Alignment:
| Q |
1 |
agtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6411 |
agtttcaaaattcgattaacagatacatacttgattctgcctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcttttcctt |
6510 |
T |
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| Q |
101 |
gacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcgaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6511 |
gacgacagacgaatcatgaatatcaaatttcgctaggtattgaatgttttacca----atatagagtgctttattgtttcaggtttaacaaattcaaaca |
6606 |
T |
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| Q |
201 |
agaaaagactt----gctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact |
274 |
Q |
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||||||| ||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
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| T |
6607 |
agaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact |
6688 |
T |
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