View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2041_low_8 (Length: 255)
Name: NF2041_low_8
Description: NF2041
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2041_low_8 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 3940171 - 3939929
Alignment:
| Q |
13 |
aatattaagttcctcataacagaagatggcactagaaatgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagtt |
112 |
Q |
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|||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3940171 |
aatattaagttcctcataacagaagatgacaccagaattgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagtt |
3940072 |
T |
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| Q |
113 |
ccgttgattcattacctatggtggacaaaaatattgttaaaagaggtcctatgttatctcagcaccaacaagacttgttgtgctccgagttcacagccgt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3940071 |
ccgttgattcattacctatggtggacaaaaatattgttaaaagaggtcctatgttatctcagcaccaacaagacttgttgtgctccgagttcacagctgt |
3939972 |
T |
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| Q |
213 |
ggaagtcaaaaatgcgttattctccatggactcttctaaagct |
255 |
Q |
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| T |
3939971 |
ggaagtcaaaaatgcgttattctccatggactcttctaaagct |
3939929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 33633420 - 33633178
Alignment:
| Q |
13 |
aatattaagttcctcataacagaagatggcactagaaatgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagtt |
112 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633420 |
aatattaagttcctcataacagaagatggcaccagaattgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagtt |
33633321 |
T |
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| Q |
113 |
ccgttgattcattacctatggtggacaaaaatattgttaaaagaggtcctatgttatctcagcaccaacaagacttgttgtgctccgagttcacagccgt |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33633320 |
ccgttgattcattacctatggtggacaaaaatgttgttaaaagaggtcctatgttatctcagcaccaacaagacttgttgtgctccaagttcacagccgt |
33633221 |
T |
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| Q |
213 |
ggaagtcaaaaatgcgttattctccatggactcttctaaagct |
255 |
Q |
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| T |
33633220 |
ggaagtcaaaaatgtgttattctccatggactcttctaaagct |
33633178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 76 - 255
Target Start/End: Complemental strand, 18263277 - 18263099
Alignment:
| Q |
76 |
gagattagagggttctatttaaaattgatgggtagttccgttgattcattacctatggtggacaaaaatattgttaaaagaggtcctatgttatctcagc |
175 |
Q |
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||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||| |
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| T |
18263277 |
gagattagaggcttctatt-aaaattgatgggtagttccgttgattcataacctatggtggacaaaaatatggttaaaaaaggtcctatgtaatctcagc |
18263179 |
T |
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| Q |
176 |
accaacaagacttgttgtgctccgagttcacagccgtggaagtcaaaaatgcgttattctccatggactcttctaaagct |
255 |
Q |
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| T |
18263178 |
accaacaagacctgttgtgctccgagttcacagccgtggaagtcaaaaatgcgttattctccatggactcttctaaagct |
18263099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 30282437 - 30282195
Alignment:
| Q |
13 |
aatattaagttcctcataacagaagatggcactagaaatgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagtt |
112 |
Q |
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|||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30282437 |
aatattaagttcctcataacagaagatgacaccagaattgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagtt |
30282338 |
T |
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| Q |
113 |
ccgttgattcattacctatggtggacaaaaatattgttaaaagaggtcctatgttatctcagcaccaacaagacttgttgtgctccgagttcacagccgt |
212 |
Q |
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| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30282337 |
ctgttgattctttacctatggtggacaaaaatattgttaaaagaggtcctatgttatctcagcaccaacaagacttgttgtgctccgagttcacagcagt |
30282238 |
T |
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| Q |
213 |
ggaagtcaaaaatgcgttattctccatggactcttctaaagct |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30282237 |
ggaagtcaaaaatgcgttattctccatggactcttctaaagct |
30282195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 35168436 - 35168201
Alignment:
| Q |
16 |
attaagttcctcataacagaagatggcactagaaatgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttccg |
115 |
Q |
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||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35168436 |
attaagttcctcataacagaagatggcaccaaaattgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttctg |
35168337 |
T |
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| Q |
116 |
ttgattcattacctatggtggacaaaaatattgttaaaagaggtcctatgttatctcagcaccaacaagacttgttgtgctccgagttcacagccgtgga |
215 |
Q |
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||||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| || |||| |
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| T |
35168336 |
ttgattcgttacctatggtggacaaaaatatcgtcaagagaggtcctatgttatctcagcatcagcaagacttgttgtgctcagagttcacaaccatgga |
35168237 |
T |
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| Q |
216 |
agtcaaaaatgcgttattctccatggactcttctaa |
251 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
35168236 |
ggtcaaaaatgcgttattctccatggattcttctaa |
35168201 |
T |
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