View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20420_high_11 (Length: 393)
Name: NF20420_high_11
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_high_11 |
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| [»] scaffold0223 (1 HSPs) |
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| [»] scaffold0665 (1 HSPs) |
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| [»] scaffold0356 (1 HSPs) |
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| [»] scaffold0696 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 22 - 374
Target Start/End: Original strand, 15556814 - 15557165
Alignment:
| Q |
22 |
gcggcgactccatcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgctccgattgctgcacttgtgcagtctgcaaaaccct |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
15556814 |
gcggcgactccatcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgcaccgattgctgcttctgtgcagtctgcaaaaccct |
15556913 |
T |
|
| Q |
122 |
ccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatatcaattactcccaactg |
221 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15556914 |
ccttcgcacaagctttacgtggcactccgtcaacggctgatcctctcatgttgccctctatccgtggagaaacgctatccatatcaattactccc-actg |
15557012 |
T |
|
| Q |
222 |
cttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgccaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||||| |
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| T |
15557013 |
cttactccagggggttagatttctgtaaaattaacctctgtggtcgtttggtattaaacaaaggtgacaaaccctatgcaaccaaatacatgactgccaa |
15557112 |
T |
|
| Q |
322 |
acttcagaaattatggaaagtctaaggaccatgtcatatgctttcccttggcc |
374 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
15557113 |
acttcagaaattatggaaagtcaaaggaccatgtcatatgctttcccttggcc |
15557165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 22 - 370
Target Start/End: Complemental strand, 15150 - 14803
Alignment:
| Q |
22 |
gcggcgactccatcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgctccgattgctgcacttgtgcagtctgcaaaaccct |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
15150 |
gcggcgactccatcctgcaatagtaatgatgctacagctgttccgacacaaattgttgctcctgctccgattgccgcacctgtgccgtctgcaaaaccct |
15051 |
T |
|
| Q |
122 |
ccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatatcaattactcccaactg |
221 |
Q |
| |
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| |||| ||||| |||||||||||||| |||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| || | |
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| T |
15050 |
cattcgcacaagctttacgtggcactctgtcaacggctgatcctctcccgctgccctctatccgtggagaaacgctatccatatcaattacaccc-accg |
14952 |
T |
|
| Q |
222 |
cttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgccaa |
321 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
14951 |
cttactcccgggggttagatttctataaaattaactttcgtggtcgtttggtattaaacaaaggcgacaaaccctatgcaaccaaagacatcactgccaa |
14852 |
T |
|
| Q |
322 |
acttcagaaattatggaaagtctaaggaccatgtcatatgctttccctt |
370 |
Q |
| |
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|||||| ||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
14851 |
acttcataaattatggaaagtcaaaggaccatggcatatgctttccctt |
14803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 110 - 372
Target Start/End: Original strand, 24025639 - 24025900
Alignment:
| Q |
110 |
ctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatatcaat |
209 |
Q |
| |
|
|||||||| |||| || | ||| || |||||||| ||||||||||| ||||| || || ||| ||||||||| |||||||||||||| |||||||||| |
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| T |
24025639 |
ctgcaaaatcctcttttgcacaggtgttacgtggtactccgtcaactactgattctatctcgtttccctctatctgtggagaaacgctagccatatcaat |
24025738 |
T |
|
| Q |
210 |
tactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaa |
309 |
Q |
| |
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| | ||| ||| ||||||| | || ||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||| | |||||||||||| | |
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| T |
24025739 |
ttcaacca-ctgtttactcctgtggtttagattattgtaaaattaacctccgtggtcgtttggtattgaacaaatgcgacaaaccatatgcaaccaaaga |
24025837 |
T |
|
| Q |
310 |
catcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttcccttgg |
372 |
Q |
| |
|
||||| |||||||| |||||| |||||||| || |||||||||| |||||||| |||||||| |
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| T |
24025838 |
tatcaccgccaaactacagaaagtatggaaaatcaaaggaccatggcatatgctatcccttgg |
24025900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 24031984 - 24032169
Alignment:
| Q |
25 |
gcgactccatcctgcaatagtaatgatgctacagctgtcccgacacaaattgttgctcctgctccgattgctgcacttgtgcagtctgcaaaaccctcct |
124 |
Q |
| |
|
|||| |||| || ||||||||| || ||| || ||||||||||||| | |||| || |||||| ||| ||||||| ||||||| ||||||||||||| | |
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|
| T |
24031984 |
gcgattccacccagcaatagtattgcggctgcaactgtcccgacacacaatgtttcttctgctcagatggctgcacctgtgcagactgcaaaaccctctt |
24032083 |
T |
|
| Q |
125 |
tcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaaacgctatccatatcaatt |
210 |
Q |
| |
|
||| || | |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |||||| |||| |
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| T |
24032084 |
tcgcaccggcgttacgtggcactccgtcaactaatgatcctatctcgttgccctctatccgtggagaaacgctagccatattaatt |
24032169 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0665 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 369
Target Start/End: Original strand, 5221 - 5496
Alignment:
| Q |
93 |
tgctgcacttgtgcagtctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaa |
192 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| || | || | | ||||||| ||||||| || ||||||||||| | ||||||| |||| ||||||| |
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|
| T |
5221 |
tgctgcacctgtgcagactgcaaaaccctcatttgctcaggctctacgtggttctccgtccactactgatcctctcccgctgccctcgatccttggagaa |
5320 |
T |
|
| Q |
193 |
acgctatccatatcaattactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaa |
292 |
Q |
| |
|
|||||| || || | ||| | ||| ||||||||| | || | |||| ||||||||||| || | ||||||| |||| || | |||||| ||||| |
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|
| T |
5321 |
acgctagccgtagctatttccacca-ctgcttactttcgaggtgtcgattattgtaaaattaatcttcgtggtcgtctggttttgagcaaaggtgacaag |
5419 |
T |
|
| Q |
293 |
acctatgcaaccaaaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttccct |
369 |
Q |
| |
|
| |||||||||||| | ||||| |||||||| ||||| |||||||||||| |||||||||| |||||||| ||||| |
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|
| T |
5420 |
ccgtatgcaaccaaagatatcaccgccaaactccagaagttatggaaagtcaaaggaccatggcatatgctgtccct |
5496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 369
Target Start/End: Original strand, 7843 - 8118
Alignment:
| Q |
93 |
tgctgcacttgtgcagtctgcaaaaccctccttcgaacaagttttacgtggcactccgtcaacagctgatcctctcatgttgccctctatccgtggagaa |
192 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| || | || | | ||||||| ||||||| || ||||||||||| | ||||||| |||| ||||||| |
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|
| T |
7843 |
tgctgcacctgtgcagactgcaaaaccctcatttgctcaggctctacgtggttctccgtccactactgatcctctcccgctgccctcgatccttggagaa |
7942 |
T |
|
| Q |
193 |
acgctatccatatcaattactcccaactgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaa |
292 |
Q |
| |
|
|||||| || || | ||| | ||| ||||||||| | || | |||| ||||||||||| || | ||||||| |||| || | |||||| ||||| |
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|
| T |
7943 |
acgctagccgtagctatttccacca-ctgcttactttcgaggtgtcgattattgtaaaattaatcttcgtggtcgtctggttttgagcaaaggtgacaag |
8041 |
T |
|
| Q |
293 |
acctatgcaaccaaaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgctttccct |
369 |
Q |
| |
|
| |||||||||||| | ||||| |||||||| ||||| |||||||||||| |||||||||| |||||||| ||||| |
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|
| T |
8042 |
ccgtatgcaaccaaagatatcaccgccaaactccagaagttatggaaagtcaaaggaccatggcatatgctgtccct |
8118 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 374
Target Start/End: Original strand, 24055636 - 24055744
Alignment:
| Q |
266 |
cgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgccaaacttcagaaattatggaaagtctaaggaccatgtcatatgcttt |
365 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||||||||||| | |||||||||||| | |||||| ||||||||||| | || || || |||||||| | |
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|
| T |
24055636 |
cgtttggtattaaacaaaggagacaaaccatatgcaaccaaggatatcactgccaaattacagaaaatatggaaagtcaaggggccctggcatatgctct |
24055735 |
T |
|
| Q |
366 |
cccttggcc |
374 |
Q |
| |
|
| ||||||| |
|
|
| T |
24055736 |
ctcttggcc |
24055744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0696 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0696
Description:
Target: scaffold0696; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 339
Target Start/End: Complemental strand, 4566 - 4446
Alignment:
| Q |
219 |
ctgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgc |
318 |
Q |
| |
|
||||||||||| | |||||||| ||||| ||||||||||| |||||||| |||| | |||||||| |||||| |||||| ||||| |||||||||| |
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|
| T |
4566 |
ctgcttactcccgagggttagacttctgcaaaattaaccttcatggtcgactggttctgaacaaaggagacaaaccctatgtgtccaaagacatcactgc |
4467 |
T |
|
| Q |
319 |
caaacttcagaaattatggaa |
339 |
Q |
| |
|
||| | ||||| |||||||| |
|
|
| T |
4466 |
caagttacagaagttatggaa |
4446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 218 - 354
Target Start/End: Complemental strand, 22393302 - 22393166
Alignment:
| Q |
218 |
actgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactg |
317 |
Q |
| |
|
|||||||||||| | ||||| |||| ||||||| |||||| | ||||| |||||| | |||||||| |||||| |||||||||||||| | ||||| | |
|
|
| T |
22393302 |
actgcttactcccgagggttggattactgtaaagctaaccttcgaggtcgattggtactgaacaaaggggacaaaccctatgcaaccaaagatatcaccg |
22393203 |
T |
|
| Q |
318 |
ccaaacttcagaaattatggaaagtctaaggaccatg |
354 |
Q |
| |
|
||||| | || ||||||||||| | |||||||||| |
|
|
| T |
22393202 |
ccaaattacatcaattatggaaaaccaaaggaccatg |
22393166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 339
Target Start/End: Complemental strand, 8687261 - 8687141
Alignment:
| Q |
219 |
ctgcttactccagggggttagatttctgtaaaattaacctccatggtcgtttggtattaaacaaaggcgacaaaacctatgcaaccaaaaacatcactgc |
318 |
Q |
| |
|
||||||||||| | |||||||| ||||| ||||||||||| |||||||| |||| | |||||||| |||||| |||||| ||||| |||||||||| |
|
|
| T |
8687261 |
ctgcttactcccgagggttagacttctgcaaaattaaccttcatggtcgactggttctgaacaaaggagacaaaccctatgtgtccaaagacatcactgc |
8687162 |
T |
|
| Q |
319 |
caaacttcagaaattatggaa |
339 |
Q |
| |
|
||| | ||||| |||||||| |
|
|
| T |
8687161 |
caagttacagaagttatggaa |
8687141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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