View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_high_12 (Length: 393)
Name: NF20420_high_12
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 9555165 - 9555533
Alignment:
| Q |
17 |
aataaaactactagccataaaacaagtagtgtgtgaccaagaattggtgaatttccaaggttgcaataaaagatttggagatagtttatgtaaccttttg |
116 |
Q |
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| T |
9555165 |
aataaaactactagccataaaacaagtagtgtgtgaccaagaattggtgaatttccaaggttgcaataaaagatttgaagatagtttatgtaaccttttg |
9555264 |
T |
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| Q |
117 |
atctacaatcagaatgtgttttgacataaatacacttagaagtgtaatttgagtaattgtgaagttctgagcatgaatcaactaggatgtcactagtgag |
216 |
Q |
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| T |
9555265 |
atctacaatcagaatgtgttttgacataaatacacttagaagtgtaatttgagtaattgtgaagttctgagcatgaatcaactaggatgtcactagtgag |
9555364 |
T |
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| Q |
217 |
aattctagcatggttgaagagttttgaggaaacatgatgaaaatcagaattagaattggaaggattgatataaagtttgatggnnnnnnncaggatgaag |
316 |
Q |
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| T |
9555365 |
aattctagcatggttgaagagttttgaggaaacatgatgaaaatgagaattagaatttgaaggattgatataaagtttgatggaaaaaaacaggatgaag |
9555464 |
T |
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| Q |
317 |
aggaaggatgtgttaaggagaagagtgagnnnnnnnggttgtgatttggagttggaagtgaaagtataa |
385 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9555465 |
aggaaggatgtgttgaggagaagagtgagtttttttggttgtgatttggagttggaagtgaaagtataa |
9555533 |
T |
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