View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20420_high_15 (Length: 353)

Name: NF20420_high_15
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20420_high_15
NF20420_high_15
[»] chr2 (14 HSPs)
chr2 (23-330)||(28215628-28215935)
chr2 (23-233)||(32565396-32565609)
chr2 (23-233)||(32806581-32806794)
chr2 (23-233)||(32815018-32815231)
chr2 (23-233)||(32309226-32309439)
chr2 (36-233)||(32799640-32799840)
chr2 (151-283)||(28220224-28220356)
chr2 (33-172)||(28220447-28220585)
chr2 (247-330)||(32309084-32309167)
chr2 (247-330)||(32565668-32565751)
chr2 (247-330)||(32799899-32799982)
chr2 (247-330)||(32806853-32806936)
chr2 (247-330)||(32815290-32815373)
chr2 (302-330)||(28216011-28216039)
[»] chr6 (2 HSPs)
chr6 (23-248)||(301362-301585)
chr6 (255-330)||(301238-301313)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 330
Target Start/End: Original strand, 28215628 - 28215935
Alignment:
Q  23 atcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaa 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28215628 atcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaacagcggaacgaacaatattctcagcttcagggcaa 28215727  T
Q  123 gaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttgactgaacgaaaagaag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28215728 gaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttcactgaacgaaaagaag 28215827  T
Q  223 tatgatagaaattaaatgaagttgttctgagtgagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcct 322  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215828 tatgatagaaattaaatgaagttgttctgagagagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcct 28215927  T
Q  323 cattttct 330  Q
    ||||||||    
T  28215928 cattttct 28215935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 32565396 - 32565609
Alignment:
Q  23 atcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  ||||||| |||||||    
T  32565396 atcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaa 32565495  T
Q  123 gaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaacttgactgaacgaaaag 219  Q
    |||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |||||||||||||||    
T  32565496 gaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaag 32565595  T
Q  220 aagtatgatagaaa 233  Q
    |||||||| |||||    
T  32565596 aagtatgagagaaa 32565609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 32806581 - 32806794
Alignment:
Q  23 atcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  ||||||| |||||||    
T  32806581 atcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaa 32806680  T
Q  123 gaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaacttgactgaacgaaaag 219  Q
    |||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |||||||||||||||    
T  32806681 gaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaag 32806780  T
Q  220 aagtatgatagaaa 233  Q
    |||||||| |||||    
T  32806781 aagtatgagagaaa 32806794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 32815018 - 32815231
Alignment:
Q  23 atcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaa 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  ||||||| |||||||    
T  32815018 atcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaa 32815117  T
Q  123 gaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaacttgactgaacgaaaag 219  Q
    |||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |||||||||||||||    
T  32815118 gaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaag 32815217  T
Q  220 aagtatgatagaaa 233  Q
    |||||||| |||||    
T  32815218 aagtatgagagaaa 32815231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 32309439 - 32309226
Alignment:
Q  23 atcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaa 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||  ||||||| |||||||    
T  32309439 atcatgaaagaaaagacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacattatcttcagcttgagggcaa 32309340  T
Q  123 gaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaacttgactgaacgaaaag 219  Q
    |||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  |||||||||||||||    
T  32309339 gaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaag 32309240  T
Q  220 aagtatgatagaaa 233  Q
    |||||||| |||||    
T  32309239 aagtatgagagaaa 32309226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 36 - 233
Target Start/End: Original strand, 32799640 - 32799840
Alignment:
Q  36 agacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaagaatccttataga 135  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||  ||||||| ||||||||||||| ||||||    
T  32799640 agacgaagaagagaaggtgcaaggtctctatgatcaaagtagatatcggtaacagcggaacgaacaatatcttcagcttgagggcaagaatccctataga 32799739  T
Q  136 aattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaata---ccagctaacttgactgaacgaaaagaagtatgatagaa 232  Q
    |||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||    | |||||  ||||||||||||||||||||||| ||||    
T  32799740 aattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctgctaaaatgactgaacgaaaagaagtatgagagaa 32799839  T
Q  233 a 233  Q
    |    
T  32799840 a 32799840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 28220356 - 28220224
Alignment:
Q  151 tggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttgactgaacgaaaagaagtatgatagaaattaaatgaagttgttct 250  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28220356 tggaaccatctctgattctttgattgaaatcaaacggaaaaataccagctaacttcactgaacgaaaagaagtatgatagaaattaaatgaagttgttct 28220257  T
Q  251 gagtgagagaagaacaggaaggactgcaatgaa 283  Q
    ||| ||||||||||||| |||||||||||||||    
T  28220256 gagagagagaagaacagaaaggactgcaatgaa 28220224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 28220585 - 28220447
Alignment:
Q  33 aagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaagaatccttat 132  Q
    |||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  28220585 aagagacgaagaagagaaggtgca-ggtctctatgattaaagtaaatatcggtaacagcggaacgaacaatattctcagcttgagggcaagaaaccttat 28220487  T
Q  133 agaaattatatcgaagattggaaccatctctgatactttc 172  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  28220486 agaaattatattgaagattggaaccatctctgattctttc 28220447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 32309167 - 32309084
Alignment:
Q  247 ttctgagtgagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttct 330  Q
    ||||||| |||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  32309167 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttct 32309084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 32565668 - 32565751
Alignment:
Q  247 ttctgagtgagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttct 330  Q
    ||||||| |||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  32565668 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttct 32565751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 32799899 - 32799982
Alignment:
Q  247 ttctgagtgagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttct 330  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  32799899 ttctgagagagagaagaacaggaaggaatacaatgaatgcaactatgaaccatgggttgaagatgaagaatctcctcattttct 32799982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 32806853 - 32806936
Alignment:
Q  247 ttctgagtgagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttct 330  Q
    ||||||| ||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  32806853 ttctgagagagggaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttct 32806936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 32815290 - 32815373
Alignment:
Q  247 ttctgagtgagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttct 330  Q
    ||||||| |||| |||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  32815290 ttctgagagagacaagaacaggaaggaatacaatgaatgcaactatgatccatgggttgaagatgaagaatctcctcattttct 32815373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 28216011 - 28216039
Alignment:
Q  302 gttgaagatgaagaatctcctcattttct 330  Q
    |||||||||||||||||||||||||||||    
T  28216011 gttgaagatgaagaatctcctcattttct 28216039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 248
Target Start/End: Complemental strand, 301585 - 301362
Alignment:
Q  23 atcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcagagtaaatatcggtaactgcggaacgaacaatattctcagcttcagggcaa 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||| |||||||||  ||||||| ||||| |    
T  301585 atcatgaaagaagagacgaagaagagaaggtgcaaggtctctatgatcaaggtagatatcggtaacagcggaaggaacaatatcttcagcttgagggcta 301486  T
Q  123 gaatccttatagaaattatatcgaagattggaaccatctctgatactttcactgaaatcaaacggaaaaataccagctaacttgactgaacgaaaagaag 222  Q
    |||||| |||||||||||||| |||||||||||||||||||||| |||| | |||||||||| |||||| ||   |||||| ||||||||| |||||  |    
T  301485 gaatccctatagaaattatattgaagattggaaccatctctgattctttgattgaaatcaaatggaaaagtattggctaacgtgactgaaccaaaag--g 301388  T
Q  223 tatgatagaaattaaatgaagttgtt 248  Q
    ||||| |||||  | |||||||||||    
T  301387 tatgagagaaagaagatgaagttgtt 301362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 301313 - 301238
Alignment:
Q  255 gagagaagaacaggaaggactgcaatgaatgcaactaagatccatgtgttgaagatgaagaatctcctcattttct 330  Q
    ||||||||||| ||||||||| ||||||||||||||| || ||||| |||||||||||||||||| ||||||||||    
T  301313 gagagaagaacgggaaggactacaatgaatgcaactatgaaccatgggttgaagatgaagaatcttctcattttct 301238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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