View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20420_high_16 (Length: 344)

Name: NF20420_high_16
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20420_high_16
NF20420_high_16
[»] chr1 (18 HSPs)
chr1 (16-336)||(6525341-6525661)
chr1 (237-334)||(6515064-6515161)
chr1 (231-333)||(6497714-6497816)
chr1 (218-333)||(6503035-6503150)
chr1 (38-147)||(47775326-47775435)
chr1 (38-147)||(47771228-47771337)
chr1 (26-149)||(6497463-6497586)
chr1 (237-336)||(6510674-6510773)
chr1 (20-149)||(6510440-6510569)
chr1 (19-144)||(47700887-47701012)
chr1 (44-147)||(47758072-47758175)
chr1 (47-141)||(6502843-6502937)
chr1 (47-147)||(47743674-47743774)
chr1 (47-129)||(47627678-47627760)
chr1 (47-144)||(6514866-6514963)
chr1 (44-144)||(47711194-47711294)
chr1 (71-123)||(47593658-47593710)
chr1 (70-114)||(47679177-47679221)
[»] chr5 (6 HSPs)
chr5 (23-141)||(28859739-28859857)
chr5 (33-147)||(27368303-27368417)
chr5 (44-144)||(28828672-28828772)
chr5 (20-138)||(28854349-28854467)
chr5 (238-333)||(28828946-28829041)
chr5 (56-144)||(469758-469846)
[»] scaffold0341 (4 HSPs)
scaffold0341 (237-336)||(12354-12453)
scaffold0341 (231-333)||(4728-4829)
scaffold0341 (20-149)||(12120-12249)
scaffold0341 (47-141)||(4522-4616)
[»] chr8 (1 HSPs)
chr8 (47-147)||(11225254-11225354)
[»] chr7 (7 HSPs)
chr7 (65-147)||(20167898-20167980)
chr7 (55-147)||(20285109-20285201)
chr7 (67-123)||(20264209-20264265)
chr7 (55-147)||(20294826-20294918)
chr7 (56-147)||(20303867-20303958)
chr7 (67-123)||(20231750-20231806)
chr7 (67-123)||(20243822-20243878)
[»] chr2 (4 HSPs)
chr2 (36-106)||(2690505-2690575)
chr2 (74-147)||(2716879-2716952)
chr2 (74-147)||(2723502-2723575)
chr2 (74-147)||(2745332-2745405)
[»] chr4 (1 HSPs)
chr4 (84-145)||(36437521-36437582)


Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 6525661 - 6525341
Alignment:
Q  16 agttccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525661 agttccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgc 6525562  T
Q  116 attgcatactccggtgccatatatccactgcaaacaatacaaataattattctcaactaaatagaatctttccacaatcatgcatcttcggtcaatttat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525561 attgcatactccggtgccatatatccactgcaaacaatacaaataattattctcaactaaatagaatctttccacaatcatgcatcttcggtcaatttat 6525462  T
Q  216 agcaactaatacttcttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatc 315  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6525461 agcaattaatacttcttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatc 6525362  T
Q  316 tgctatcttaggattcatctc 336  Q
    |||||||||||||||||||||    
T  6525361 tgctatcttaggattcatctc 6525341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 237 - 334
Target Start/End: Original strand, 6515064 - 6515161
Alignment:
Q  237 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatc 334  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||    
T  6515064 atacttactaggttcccacaattctatttgtgttttcctgggtttggtccacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatc 6515161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 6497714 - 6497816
Alignment:
Q  231 ttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggatt 330  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||| |||||||||||||| | ||||||||||||    
T  6497714 ttttgaatacttactaggttcccacaattctttttgtgttttcctgtgtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggatt 6497813  T
Q  331 cat 333  Q
    |||    
T  6497814 cat 6497816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 218 - 333
Target Start/End: Original strand, 6503035 - 6503150
Alignment:
Q  218 caactaatacttcttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctg 317  Q
    |||| ||||||| ||||| || ||||||| |||||||||||||| ||||| |||||||| |||||||| ||| |||| ||||| |||||||||||||| |    
T  6503035 caaccaatactttttttgaatgcttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcag 6503134  T
Q  318 ctatcttaggattcat 333  Q
    ||||||||||||||||    
T  6503135 ctatcttaggattcat 6503150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 47775435 - 47775326
Alignment:
Q  38 tttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatat 137  Q
    ||||| || ||||||| ||||||||||| |||||| || |||||||| ||||| || || || |||||||||||||||||||||||||| ||||||||||    
T  47775435 tttttatgaccacttaaaatctcaagaaccaatactccgaaactaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatat 47775336  T
Q  138 atccactgca 147  Q
    ||||||||||    
T  47775335 atccactgca 47775326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 47771337 - 47771228
Alignment:
Q  38 tttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatat 137  Q
    ||||| || ||||||||||||||||||| |||||| ||||| ||||| ||||| || || || |||||||||||||||||||||||||| |||||||| |    
T  47771337 tttttatgaccacttataatctcaagaaccaataccccaaagctaaagacatccgattttaccgaaaattgtccatgcattgcatactcaggtgccatgt 47771238  T
Q  138 atccactgca 147  Q
    |||| |||||    
T  47771237 atccgctgca 47771228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 6497463 - 6497586
Alignment:
Q  26 cgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatact 125  Q
    |||||||||||||||||    |||||||  || ||||||| ||||| ||| ||||| |||||||| |||||||||||||||||||| ||||| ||||| |    
T  6497463 cgaatgccactgttttttgaaccacttacgatttcaagaaccaatataccgaaactgaatacatccgacttcactgaaaattgtccgtgcatagcatatt 6497562  T
Q  126 ccggtgccatatatccactgcaaa 149  Q
    | ||||||||||||||||| ||||    
T  6497563 caggtgccatatatccactacaaa 6497586  T

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Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 6510674 - 6510773
Alignment:
Q  237 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 336  Q
    |||||||||| |||||||||||||| ||||| |||||||| |||||||| | |  ||| || || |||||||||||||| ||||||||||||||||||||    
T  6510674 atacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatcttaggattcatctc 6510773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 6510440 - 6510569
Alignment:
Q  20 ccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattg 119  Q
    |||| ||||||||||||||||||    ||||||| ||| || | || ||||| |||||||||||| ||||| || || |||||||| ||||| ||||||     
T  6510440 ccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcatta 6510539  T
Q  120 catactccggtgccatatatccactgcaaa 149  Q
    ||||||| ||||||||||||||||| ||||    
T  6510540 catactcaggtgccatatatccactacaaa 6510569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 47700887 - 47701012
Alignment:
Q  19 tccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcatt 118  Q
    ||||||| ||||||||||  | || ||||||||||||||||| ||||  | ||| ||||||||||| ||||| || || |||||||||||||||  ||||    
T  47700887 tccatgaagaatgccactaatcttttggccacttataatctctagaactagtacgccaaaactaaaaacatccgatttgactgaaaattgtccaaacatt 47700986  T
Q  119 gcatactccggtgccatatatccact 144  Q
    ||||| ||  ||||||||||||||||    
T  47700987 gcatattcgagtgccatatatccact 47701012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 47758072 - 47758175
Alignment:
Q  44 tggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccac 143  Q
    ||||||||||||||||| | ||  | ||||||||||||||| |||||||| || || ||||||| ||||  |||||||||||| || |||||||||||||    
T  47758072 tggccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccac 47758171  T
Q  144 tgca 147  Q
    ||||    
T  47758172 tgca 47758175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 6502843 - 6502937
Alignment:
Q  47 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatcc 141  Q
    ||||||| ||| ||||||| ||||| ||||||||| || |||||||| || || ||||||||||| |||||| ||||||| ||||||||||||||    
T  6502843 ccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatcc 6502937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 47743674 - 47743774
Alignment:
Q  47 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgc 146  Q
    |||||||||||||| | ||  | ||||||||||||||| |||||||| || || ||||||| ||||  |||||||||||| || ||||||||||||||||    
T  47743674 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 47743773  T
Q  147 a 147  Q
    |    
T  47743774 a 47743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 47627760 - 47627678
Alignment:
Q  47 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccgg 129  Q
    ||||| |||||||| |||| ||  || ||||||||||| ||||| |||||| ||||||||||||||||||||||||| |||||    
T  47627760 ccactaataatctcgagaaccatcactccaaaactaaaaacatcagacttctctgaaaattgtccatgcattgcatattccgg 47627678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 6514866 - 6514963
Alignment:
Q  47 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccact 144  Q
    ||||||| ||| |||||||  |||| |||||||||||| |||||||| ||   |||||||||||||||| | |||||||| ||||||||||| |||||    
T  6514866 ccacttacaatttcaagaactaatataccaaaactaaagacatctgattttgttgaaaattgtccatgcctcgcatactctggtgccatatacccact 6514963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 47711194 - 47711294
Alignment:
Q  44 tggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccac 143  Q
    ||||||||||||||||| | ||  ||||| ||||||||||| |||||||| || || ||||||| ||||  | || ||||||| || |||||||||||||    
T  47711194 tggccacttataatctccaaaactaatactccaaaactaaaaacatctgattttaccgaaaattctccaaaccttacatactcgggagccatatatccac 47711293  T
Q  144 t 144  Q
    |    
T  47711294 t 47711294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 47593710 - 47593658
Alignment:
Q  71 acaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcata 123  Q
    |||||||||||||| ||||| |||||| ||||||| |||||| ||||||||||    
T  47593710 acaccaaaactaaaaacatccgacttctctgaaaagtgtccaagcattgcata 47593658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 47679221 - 47679177
Alignment:
Q  70 tacaccaaaactaaatacatctgacttcactgaaaattgtccatg 114  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    
T  47679221 tacaccaaaactaaacacatctgacttaactgagaattgtccatg 47679177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 28859739 - 28859857
Alignment:
Q  23 tgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcat 122  Q
    |||||||||| ||| || || |||||||||||||||||||||| ||  |||||||||||||| |||||||| ||||||||||||| |||||||||| |||    
T  28859739 tgacgaatgcaactattcttttggccacttataatctcaagaaccagaacaccaaaactaaagacatctgatttcactgaaaattctccatgcattacat 28859838  T
Q  123 actccggtgccatatatcc 141  Q
    |||| ||||||||||||||    
T  28859839 actcaggtgccatatatcc 28859857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 27368303 - 27368417
Alignment:
Q  33 cactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgc 132  Q
    |||| ||||| || |||||||||||||||||||  ||||| ||||||||| | |||||||| || || ||||||| ||||||||| |||||||| |||||    
T  27368303 cactatttttatgaccacttataatctcaagaagtaatactccaaaactatagacatctgattttaccgaaaattctccatgcatcgcatactcaggtgc 27368402  T
Q  133 catatatccactgca 147  Q
    |||||||||||||||    
T  27368403 catatatccactgca 27368417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 28828672 - 28828772
Alignment:
Q  44 tggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccac 143  Q
    ||||||||||||||||||||||  | ||||||||||| ||| |||||||| ||||| ||||||| |||||||||| ||||||| |||||||| |||||||    
T  28828672 tggccacttataatctcaagaactagtacaccaaaaccaaagacatctgatttcaccgaaaattctccatgcattacatactcaggtgccatgtatccac 28828771  T
Q  144 t 144  Q
    |    
T  28828772 t 28828772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 28854349 - 28854467
Alignment:
Q  20 ccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattg 119  Q
    |||||| || ||||||| || ||  |||||||||||||||||||||  | |||||||||||| || |||||||| || |||||||||| ||||||||||     
T  28854349 ccatgatgagtgccactattctttaggccacttataatctcaagaactagtacaccaaaactgaagacatctgattttactgaaaattctccatgcatta 28854448  T
Q  120 catactccggtgccatata 138  Q
    ||||||| |||||||||||    
T  28854449 catactcaggtgccatata 28854467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 28828946 - 28829041
Alignment:
Q  238 tacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcat 333  Q
    ||||||||||||||| ||||||||  |||||||| | || ||||| ||||||  ||  ||||| ||||||||||||||||||||||||| ||||||    
T  28828946 tacttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcat 28829041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 469758 - 469846
Alignment:
Q  56 atctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccact 144  Q
    ||||||||||| |  || |||||||| || ||||| || ||| | ||||||||||| ||||||||||| ||||| | |||||| |||||    
T  469758 atctcaagaattataactccaaaactgaacacatcggatttctcagaaaattgtccgtgcattgcatattccggagacatataaccact 469846  T

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Target: scaffold0341 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 237 - 336
Target Start/End: Original strand, 12354 - 12453
Alignment:
Q  237 atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc 336  Q
    |||||||||| |||||||||||||| ||||| |||||||| |||||||| | |  ||| || || |||||||||||||| ||||||||||||||||||||    
T  12354 atacttactaagttcccacaattctatttgtgttttcctgggtttggtcaatactaaaaagccttgccatgccaaaatcagctatcttaggattcatctc 12453  T

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Target: scaffold0341; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 4728 - 4829
Alignment:
Q  231 ttttgcatacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggatt 330  Q
    ||||| || ||||||| |||||||||||||| ||||| ||| |||| |||||||| ||| |||| ||||| |||||||||||||| ||||||||||||||    
T  4728 ttttgaatgcttactaagttcccacaattctatttgtgttt-cctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggatt 4826  T
Q  331 cat 333  Q
    |||    
T  4827 cat 4829  T

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Target: scaffold0341; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 12120 - 12249
Alignment:
Q  20 ccatgacgaatgccactgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattg 119  Q
    |||| ||||||||||||||||||    ||||||| ||| || | || ||||| |||||||||||| ||||| || || |||||||| ||||| ||||||     
T  12120 ccatcacgaatgccactgttttttgcaccacttacaatttctaaaaccaatataccaaaactaaagacatcggattttactgaaaactgtccttgcatta 12219  T
Q  120 catactccggtgccatatatccactgcaaa 149  Q
    ||||||| ||||||||||||||||| ||||    
T  12220 catactcaggtgccatatatccactacaaa 12249  T

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Target: scaffold0341; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 4522 - 4616
Alignment:
Q  47 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatcc 141  Q
    ||||||| ||| ||||||| ||||| ||||||||| || |||||||| || || ||||||||||| |||||| ||||||| ||||||||||||||    
T  4522 ccacttacaatttcaagaaccaatataccaaaactgaagacatctgattttaccgaaaattgtccgtgcattacatactcaggtgccatatatcc 4616  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 147
Target Start/End: Complemental strand, 11225354 - 11225254
Alignment:
Q  47 ccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgc 146  Q
    |||||||||||||| | ||  | ||||||||||||||| |||||||| || || ||||||| ||||  |||||||||||| || ||||||||||||||||    
T  11225354 ccacttataatctccaaaactagtacaccaaaactaaaaacatctgattttaccgaaaattctccaaacattgcatactcaggagccatatatccactgc 11225255  T
Q  147 a 147  Q
    |    
T  11225254 a 11225254  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 20167898 - 20167980
Alignment:
Q  65 atcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 147  Q
    ||||| |||||||| ||||| |||||||| ||| |||||||| |||| |||||||||||||| || | |||||| ||||||||    
T  20167898 atcaaaacaccaaagctaaacacatctgatttctctgaaaatagtccttgcattgcatactcgggagacatatagccactgca 20167980  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 20285201 - 20285109
Alignment:
Q  55 aatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 147  Q
    |||||| || ||||| |||||||||||||| | |||||| ||| ||||||||  ||| ||||||||||| ||||| | |||||| ||||||||    
T  20285201 aatctctagtatcaaaacaccaaaactaaaaaaatctgatttctctgaaaataatccttgcattgcatattccggagacatatagccactgca 20285109  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 20264265 - 20264209
Alignment:
Q  67 caatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcata 123  Q
    |||||||||||| ||||| |||||||||||| ||||||||  ||| |||||||||||    
T  20264265 caatacaccaaagctaaaaacatctgacttctctgaaaataatccttgcattgcata 20264209  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 20294918 - 20294826
Alignment:
Q  55 aatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 147  Q
    |||||| || ||||| |||||||| ||||| |||||||| ||| ||||||||  ||| ||||||||||| || || | |||||| ||||||||    
T  20294918 aatctctagcatcaaaacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcatattcaggagacatatagccactgca 20294826  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 20303958 - 20303867
Alignment:
Q  56 atctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 147  Q
    ||||| ||||||||||||||||| ||||| |||||||| ||| |||||||  ||||  ||||||| || || || | |||||| ||||||||    
T  20303958 atctctagaatcaatacaccaaagctaaaaacatctgatttctctgaaaaaagtcctcgcattgcgtattcaggagacatatagccactgca 20303867  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 20231806 - 20231750
Alignment:
Q  67 caatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcata 123  Q
    |||||||||||| ||||| |||||||| ||| ||||||||  ||| |||||||||||    
T  20231806 caatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcata 20231750  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 20243878 - 20243822
Alignment:
Q  67 caatacaccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcata 123  Q
    |||||||||||| ||||| |||||||| ||| ||||||||  ||| |||||||||||    
T  20243878 caatacaccaaagctaaaaacatctgatttctctgaaaataatccttgcattgcata 20243822  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 2690505 - 2690575
Alignment:
Q  36 tgtttttgtggccacttataatctcaagaatcaatacaccaaaactaaatacatctgacttcactgaaaat 106  Q
    |||||||| ||||||| | |||||| || | |||||| ||||||||| ||||||||||||| |||||||||    
T  2690505 tgtttttgcggccactcacaatctctagtagcaatacgccaaaactatatacatctgacttgactgaaaat 2690575  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 2716879 - 2716952
Alignment:
Q  74 ccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 147  Q
    |||||||||||||||||||| ||| |||||||   ||| | ||||||||| ||||| | ||| |||||||||||    
T  2716879 ccaaaactaaatacatctgatttctctgaaaacaatccttccattgcatattccggagacatgtatccactgca 2716952  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 2723502 - 2723575
Alignment:
Q  74 ccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 147  Q
    |||||||||||||||||||| ||| |||||||  | || | ||||||||| ||||| | ||| |||||||||||    
T  2723502 ccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccactgca 2723575  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 2745332 - 2745405
Alignment:
Q  74 ccaaaactaaatacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactgca 147  Q
    |||||||||||||||||||| ||| |||||||  | || | ||||||||| ||||| | ||| |||||||||||    
T  2745332 ccaaaactaaatacatctgatttctctgaaaacagcccttccattgcatattccggagacatgtatccactgca 2745405  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 36437521 - 36437582
Alignment:
Q  84 atacatctgacttcactgaaaattgtccatgcattgcatactccggtgccatatatccactg 145  Q
    ||||||| |||||||| ||||||||||| | ||| ||||||||||| | |||||| ||||||    
T  36437521 atacatcagacttcaccgaaaattgtccttccatggcatactccggagacatataaccactg 36437582  T

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