View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20420_high_3 (Length: 698)
Name: NF20420_high_3
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 178 - 693
Target Start/End: Original strand, 3819885 - 3820383
Alignment:
| Q |
178 |
taggtggtagtgcattattttctttggtaactacactcatctatcaatattcaacggtgaacctttgtccaatatatagacagtcttttcagtatcaaac |
277 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| |
|
|
| T |
3819885 |
taggtggtaatccattattttctttggcaactacactcatctatcaatactcaacggtgaacctttgtcgaatatata-------------------aac |
3819965 |
T |
|
| Q |
278 |
ttccaacaaaagcatcaattgttatgatattaacctataaagatagtctaacccaaatgactaagtgt-gaatgtttcatcatttaaatatcacaatgag |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3819966 |
ttccaacaaaagcatcaattgttatgatattaacctataaagatagtctaacccaaatgactaagtgttgaatgtttcatcatttaaatatcacaatgag |
3820065 |
T |
|
| Q |
377 |
ctttctttagctaagactcatagcagcctcaatttgtctaaaactttgtatattctagaaaactcatgcgtacttacaaatgctttaataccaagttcga |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
3820066 |
ctttctttagctaagactcatagcagcctcaatttgtctaaaactttgtatattctagaaaactcatgcgtacttacaaatgctttattaccaagtgcaa |
3820165 |
T |
|
| Q |
477 |
tggtacaaaaatcaatc-nnnnnnnactgaatatattaatcttagatattcattaagatgctaaataatcaatttttgtcggcagagttacatgaagttc |
575 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3820166 |
tggtacaaaaatcaatcttttttttactgaatatattaatcttagatattcattaagatgctaaataatcaatttttgtcggcagagttacatgaagttc |
3820265 |
T |
|
| Q |
576 |
gcaaatttttagcataatgtagggtcagatgagacaattctttggtactttttcacatggggagagcaaggacacaagccctaccattcagacatttctt |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3820266 |
gcaaatttttagcataatgtagggtcagatgagacaattctttggtactttttcacatggggagagcaaggacacaagccctaccattcagacatttctt |
3820365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 3819442 - 3819604
Alignment:
| Q |
18 |
tcgactaggtggaacaacttattgtttaagtaccacacatattgagtccctnnnnnnntaccacacgttaagttttcttatctatttgacgtgagactca |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3819442 |
tcgattaggtggaacaacttattgtttaagtaccacacacattgagtccctaaaaaaataccacacattaagttttcttatctatttgacgtgagactca |
3819541 |
T |
|
| Q |
118 |
taacattgccacctctttaata-ccaacgtctacaacaacttccactctatcaatactaacta |
179 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3819542 |
taacattaccacctctttaatagccaacgtctacaacaacttccactctatcaatactaacta |
3819604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University