View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20420_high_30 (Length: 238)

Name: NF20420_high_30
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20420_high_30
NF20420_high_30
[»] chr4 (4 HSPs)
chr4 (18-238)||(35106551-35106771)
chr4 (21-94)||(35073092-35073165)
chr4 (18-94)||(36296862-36296932)
chr4 (18-94)||(35097526-35097596)
[»] chr6 (2 HSPs)
chr6 (18-94)||(24014588-24014658)
chr6 (18-94)||(24041145-24041215)
[»] chr1 (1 HSPs)
chr1 (18-114)||(3122898-3122987)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 35106771 - 35106551
Alignment:
Q  18 caaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacatgtttgatgtagttgagaactcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35106771 caaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacatgtttgatgtagttgagaactctg 35106672  T
Q  118 gaagttgagagtagtagattgttaacttgcagtcaatgcttagtgtgaatcatctgctttgcaggcacggtttataaaagagatggaggaattcatcatg 217  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35106671 gaagttgagcgtagtagatttttaacttgcagtcaatgcttagtgtgaatcatctgctttgcaggcacggtttataaaagagatggaggtattcatcatg 35106572  T
Q  218 taacttccagaaaatgctgtt 238  Q
    |||||||||||||||||||||    
T  35106571 taacttccagaaaatgctgtt 35106551  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 35073092 - 35073165
Alignment:
Q  21 acgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacat 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35073092 acgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcagcgacat 35073165  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 36296862 - 36296932
Alignment:
Q  18 caaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacat 94  Q
    ||||| ||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||| ||||||    
T  36296862 caaacatcaagggagaatggatcgaaaacgttgctcct------tcggccaccaaagaaacttggaatcagcgacat 36296932  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 35097596 - 35097526
Alignment:
Q  18 caaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacat 94  Q
    ||||||||||| ||||||||||| |||  |||||||||||||||      |||||||||||||||||||||||||||    
T  35097596 caaacgtcaagagagaatggatcaaaagtgttgctccttcggcc------accaaagaaacttggaatcaacgacat 35097526  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 24014588 - 24014658
Alignment:
Q  18 caaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacat 94  Q
    ||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||    
T  24014588 caaacgtcaagggagaatggatcgaaaacgttgctcct------tcggccaccaaagaaacttggaatcaacgacat 24014658  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 24041145 - 24041215
Alignment:
Q  18 caaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacat 94  Q
    |||||||||||||| |||||||| |||  |||||||||||||      |||||||||||||||||||||| ||||||    
T  24041145 caaacgtcaagggaaaatggatcaaaagtgttgctccttcgg------ccaccaaagaaacttggaatcagcgacat 24041215  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 3122987 - 3122898
Alignment:
Q  18 caaacgtcaagggagaatggatcgaaaacgttgctccttcggcctcggccaccaaagaaacttggaatcaacgacatgtttgatgtagttgagaact 114  Q
    |||||||| ||| |||| |||||||||||||||||| |||||||      |||||||||||||||||||| |||||| ||||||| |||||||||||    
T  3122987 caaacgtcgaggaagaagggatcgaaaacgttgctcattcggcc------accaaagaaacttggaatcagcgacat-tttgatgaagttgagaact 3122898  T

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