View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20420_high_36 (Length: 213)
Name: NF20420_high_36
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_high_36 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 12611145 - 12610942
Alignment:
| Q |
10 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
109 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12611145 |
cgaaaaatatgcacaatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
12611046 |
T |
|
| Q |
110 |
tgcaacaagggtcacccgtcaacatcactaaggttgtagtttcatcaacatttggtatcattacaaaggccgcgtttggcagcaaaggcaaaggcagaga |
209 |
Q |
| |
|
|||||||||||| |||||||| || ||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12611045 |
cgcaacaagggtcgcccgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagaga |
12610946 |
T |
|
| Q |
210 |
agag |
213 |
Q |
| |
|
|||| |
|
|
| T |
12610945 |
agag |
12610942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 15884903 - 15885095
Alignment:
| Q |
10 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
109 |
Q |
| |
|
|||| ||||||||| ||||||||||| | ||||| | ||| ||||| || || |||||||||||||||| | ||| ||||||| | |||| ||||| || |
|
|
| T |
15884903 |
cgaaaaatatgcacaatggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggtt |
15885002 |
T |
|
| Q |
110 |
tgcaacaagggtcacccgtcaacatcactaaggttgtagtttcatcaacatttggtatcattacaaaggccgcgtttggcagcaaaggcaaag |
202 |
Q |
| |
|
| | ||||||||| || ||||| ||||| | ||||||||||||| ||||||| |||| || ||| ||| || ||||| | |||| |||||| |
|
|
| T |
15885003 |
cgaagcaagggtcatccatcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaag |
15885095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 12638145 - 12638017
Alignment:
| Q |
10 |
cgaagaatatgcacgatggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgatt |
109 |
Q |
| |
|
|||| ||||||||| || || ||| | || ||||| ||||||||||| || | || ||||||||||||||| | | ||||||| | |||| ||||||| |
|
|
| T |
12638145 |
cgaaaaatatgcacaattgaacttcttacgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgatt |
12638046 |
T |
|
| Q |
110 |
tgcaacaagggtcacccgtcaacatcact |
138 |
Q |
| |
|
|||||||| |||||| ||||||||||| |
|
|
| T |
12638045 |
cacaacaaggatcacccatcaacatcact |
12638017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 63224 - 63150
Alignment:
| Q |
64 |
ccaataagagaagaagagcttaacaatctcgtaaaaaagattgatttgcaacaagggtcacccgtcaacatcact |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||| |||||||||||||||||| | || |||||||||||| |
|
|
| T |
63224 |
ccaataagagaagaagagctctccaatctcatcaaaaggattgatttgcaacaaggattgcctgtcaacatcact |
63150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University