View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20420_high_4 (Length: 522)

Name: NF20420_high_4
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20420_high_4
NF20420_high_4
[»] chr8 (6 HSPs)
chr8 (19-338)||(29094145-29094468)
chr8 (333-486)||(24963048-24963201)
chr8 (338-487)||(38112484-38112633)
chr8 (339-487)||(8750017-8750165)
chr8 (337-460)||(41648542-41648663)
chr8 (392-452)||(42787411-42787471)
[»] chr7 (2 HSPs)
chr7 (337-487)||(40404095-40404245)
chr7 (391-439)||(43353790-43353838)
[»] chr5 (3 HSPs)
chr5 (378-469)||(11999750-11999841)
chr5 (385-455)||(9617992-9618062)
chr5 (390-431)||(31858912-31858953)
[»] chr1 (4 HSPs)
chr1 (385-455)||(5829961-5830031)
chr1 (391-437)||(30961244-30961290)
chr1 (391-455)||(42434143-42434207)
chr1 (392-437)||(29300662-29300707)
[»] chr6 (3 HSPs)
chr6 (338-431)||(2915743-2915835)
chr6 (391-437)||(748159-748205)
chr6 (385-438)||(4120772-4120825)
[»] chr3 (1 HSPs)
chr3 (391-432)||(30129803-30129844)
[»] chr2 (1 HSPs)
chr2 (391-432)||(6310243-6310284)
[»] chr4 (4 HSPs)
chr4 (391-439)||(1034504-1034552)
chr4 (390-437)||(19876971-19877018)
chr4 (390-437)||(49822292-49822339)
chr4 (398-438)||(1822277-1822317)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 29094468 - 29094145
Alignment:
Q  19 gttctaggtgaagatatgtcaaggagaatggttaggtttcctaagcttacagccatggtggaaaagagagaagaaagaaggttttgaatattgaaaagga 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29094468 gttctaggtgaagatatgtcaaggagtatggttaggtttcctaagcttacagccatggtggaaaagagagaagaaagaaggttttgaatattgaaaagga 29094369  T
Q  119 agaggtgaagatattttatgtggttgtagtaacttgtaaggaagaagatggctatgggatctttgtcggttttacagtaacgtggagatgtgtagtccag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||    
T  29094368 agaggtgaagatattttatgtggttgtagtaacttgtaaggaagaagatggctatgggatctttgtcggttttgcagtaacgtggaaatgtgtaggccag 29094269  T
Q  219 tgacgtgtggcaccttctctcatcgttaaactagtcaaaatgcatggaccccgta-------agataatcatgagctagtgtacaacgaatagttaaatt 311  Q
    |||||||||||||||||| |||||| || ||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||   |||||||    
T  29094268 tgacgtgtggcaccttctatcatcgctatactagtcaaaatgcatggaccccgtattatttgagataatcatgagctagtgtataacgaa---ttaaatt 29094172  T
Q  312 agtctcttaatgcattaaaactttaaa 338  Q
    |||||||||||||||||||||||||||    
T  29094171 agtctcttaatgcattaaaactttaaa 29094145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 333 - 486
Target Start/End: Original strand, 24963048 - 24963201
Alignment:
Q  333 tttaaagagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgtc 432  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  24963048 tttatagagtgatgatacacaaacctccatagttggcacacaccattctaaacactcccatgtggcatttttaattaattacattaagggtaattttgtc 24963147  T
Q  433 cattcaatctctcttccttcacctatctttaacctcacgcgactttcttcaccc 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24963148 cattcaatctctcttccttcacctatctttaacctcacgcgactttcttcaccc 24963201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 338 - 487
Target Start/End: Original strand, 38112484 - 38112633
Alignment:
Q  338 agagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgtccattc 437  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||    
T  38112484 agagtgatgatacacaaacctccatagttggcacacaccattctacacactctcatgtggcatttttaattaattacattaagggtaattttgtccattc 38112583  T
Q  438 aatctctcttccttcacctatctttaacctcacgcgactttcttcacccc 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38112584 aatctctcttccttcacctatctttaacctcacgcgactttcttcacccc 38112633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 339 - 487
Target Start/End: Complemental strand, 8750165 - 8750017
Alignment:
Q  339 gagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgtccattca 438  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||    
T  8750165 gagtgatgatacacaaacctccatagttggcacacaccattctacacactcccatgtggcatttttaattaattacattaagggtaattttgtctattca 8750066  T
Q  439 atctctcttccttcacctatctttaacctcacgcgactttcttcacccc 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8750065 atctctcttccttcacctatctttaacctcacgcgactttcttcacccc 8750017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 337 - 460
Target Start/End: Complemental strand, 41648663 - 41648542
Alignment:
Q  337 aagagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgtccatt 436  Q
    ||||||||||||| |||||||| ||||  ||||| ||| | ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  41648663 aagagtgatgatatacaaacatccatacatggcatacatccttctacacactcccatgtggcatttttaaataattttattaagggtaattttgtccatt 41648564  T
Q  437 caatctctcttccttcacctatct 460  Q
    ||  ||||||||||||||| ||||    
T  41648563 ca--ctctcttccttcacccatct 41648542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 452
Target Start/End: Complemental strand, 42787471 - 42787411
Alignment:
Q  392 atgtggcatttttaattaattatattaagggtaattttgtccattcaatctctcttccttc 452  Q
    |||||||||||||||||||||||||| | |||||||||||||||||| | |||||||||||    
T  42787471 atgtggcatttttaattaattatattgaaggtaattttgtccattcactttctcttccttc 42787411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 337 - 487
Target Start/End: Complemental strand, 40404245 - 40404095
Alignment:
Q  337 aagagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgtccatt 436  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||    
T  40404245 aagagtgatgatacacaaacctccatagttggcacacaccattctacacactcccatgtggcatttttaattaattacattaagggtaattttgtcaatt 40404146  T
Q  437 caatctctcttccttcacctatctttaacctcacgcgactttcttcacccc 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40404145 caatctctcttccttcacctatctttaacctcacgcgactttcttcacccc 40404095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 43353790 - 43353838
Alignment:
Q  391 tatgtggcatttttaattaattatattaagggtaattttgtccattcaa 439  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  43353790 tatgtggcatttttaattaatttttttaagggtaattttgtccattcaa 43353838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 378 - 469
Target Start/End: Original strand, 11999750 - 11999841
Alignment:
Q  378 ttctacacactcctatgtggcatttttaattaattatattaagggtaattttgtccattcaatctctcttccttcacctatctttaacctca 469  Q
    |||||||||| || || || |||||||||||||||| ||| |||||||||||||| ||||| ||||||||||||| ||  ||||| ||||||    
T  11999750 ttctacacaccccaatatgccatttttaattaattacattgagggtaattttgtctattcactctctcttccttcccccgtctttgacctca 11999841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 455
Target Start/End: Original strand, 9617992 - 9618062
Alignment:
Q  385 cactcctatgtggcatttttaattaattatattaagggtaattttgtccattcaatctctcttccttcacc 455  Q
    ||||| |||||||||||||| |||||||  ||||||||||||| |||| |||| | |||||||||||||||    
T  9617992 cactcatatgtggcattttttattaatttcattaagggtaattctgtctattccaactctcttccttcacc 9618062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 431
Target Start/End: Original strand, 31858912 - 31858953
Alignment:
Q  390 ctatgtggcatttttaattaattatattaagggtaattttgt 431  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  31858912 ctatgtggcattgtttattaattatattaagggtaattttgt 31858953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 455
Target Start/End: Original strand, 5829961 - 5830031
Alignment:
Q  385 cactcctatgtggcatttttaattaattatattaagggtaattttgtccattcaatctctcttccttcacc 455  Q
    ||||| |||||||||||||| |||||||  ||||||||||||| |||| |||| | |||||||||||||||    
T  5829961 cactcatatgtggcattttttattaatttcattaagggtaattctgtctattccaactctcttccttcacc 5830031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 30961244 - 30961290
Alignment:
Q  391 tatgtggcatttttaattaattatattaagggtaattttgtccattc 437  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  30961244 tatgtggcatttttaattaattttatcaagggtaattttgtcaattc 30961290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 455
Target Start/End: Original strand, 42434143 - 42434207
Alignment:
Q  391 tatgtggcatttttaattaattatattaagggtaattttgtccattcaatctctcttccttcacc 455  Q
    |||||||||||||| |||||||  | |||||||||||||||||||||   || ||||||||||||    
T  42434143 tatgtggcattttttattaatttcagtaagggtaattttgtccattcctactttcttccttcacc 42434207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Original strand, 29300662 - 29300707
Alignment:
Q  392 atgtggcatttttaattaattatattaagggtaattttgtccattc 437  Q
    ||||||||||||||| ||||| ||||||||||| |||| |||||||    
T  29300662 atgtggcatttttaaataattttattaagggtagttttatccattc 29300707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 431
Target Start/End: Original strand, 2915743 - 2915835
Alignment:
Q  338 agagtgatgatacacaaacattcatagttggcacacaccattctacacactcctatgtggcatttttaattaattatattaagggtaattttgt 431  Q
    |||||| |||||||||||||||| ||  ||||| || || || ||||| ||||||||| |||||||| |||||||| |||||||| ||||||||    
T  2915743 agagtgctgatacacaaacattcttatgtggcaaacccccttatacac-ctcctatgtagcattttttattaattacattaagggcaattttgt 2915835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 437
Target Start/End: Complemental strand, 748205 - 748159
Alignment:
Q  391 tatgtggcatttttaattaattatattaagggtaattttgtccattc 437  Q
    |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  748205 tatgtggcatttttaattaattttatcaagggtaattttgtcaattc 748159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 4120772 - 4120825
Alignment:
Q  385 cactcctatgtggcatttttaattaattatattaagggtaattttgtccattca 438  Q
    ||||| ||||||| |||||| |||||||  |||||||||||||||||| |||||    
T  4120772 cactcatatgtggtattttttattaatttcattaagggtaattttgtcaattca 4120825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 30129844 - 30129803
Alignment:
Q  391 tatgtggcatttttaattaattatattaagggtaattttgtc 432  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  30129844 tatgtggcatttttaattaattttattaagggtaattttgtc 30129803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 6310284 - 6310243
Alignment:
Q  391 tatgtggcatttttaattaattatattaagggtaattttgtc 432  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  6310284 tatgtggcatttttaattaattttattaagggtaattttgtc 6310243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 1034504 - 1034552
Alignment:
Q  391 tatgtggcatttttaattaattatattaagggtaattttgtccattcaa 439  Q
    ||||||||||||||||||| || | ||||||||||||||||||||||||    
T  1034504 tatgtggcatttttaattattttttttaagggtaattttgtccattcaa 1034552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 19876971 - 19877018
Alignment:
Q  390 ctatgtggcatttttaattaattatattaagggtaattttgtccattc 437  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||||    
T  19876971 ctatgtggcatttttaattaattttattaaggatagttttgtccattc 19877018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 49822292 - 49822339
Alignment:
Q  390 ctatgtggcatttttaattaattatattaagggtaattttgtccattc 437  Q
    ||||||||||||||||||||||| |||||||| || ||||||||||||    
T  49822292 ctatgtggcatttttaattaattttattaaggatagttttgtccattc 49822339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 1822277 - 1822317
Alignment:
Q  398 catttttaattaattatattaagggtaattttgtccattca 438  Q
    ||||||||||||||| |||||||| || |||||||||||||    
T  1822277 catttttaattaattttattaaggatagttttgtccattca 1822317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University