View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_high_6 (Length: 436)
Name: NF20420_high_6
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 2326314 - 2325919
Alignment:
| Q |
19 |
tcaacagcctgaatagaacagaaagagtgcaaaggttgtcttgaagagttatttctccattttcaacatagctcttgtgaatgtattgcataacttcatc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326314 |
tcaacagcctgaatagaacagaaagagtgcaaaggttgtcttcaagcgttatttctccattttcaacatagctcttgtgaatgtattgcataacttcatc |
2326215 |
T |
|
| Q |
119 |
aatctcattttcgtaatgatagctcacacccaaacgacatatcgaatcaattaagttaattttttctgagggcttttcagtttttgagatattaaacatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326214 |
aatctcattttcgtaatgatagctcacacccaaacgacatatcgaatcaattaagttaattttttctgagggcttttcagtttttgagatattaaacatg |
2326115 |
T |
|
| Q |
219 |
tttctcacttccttttttagcgcatcaatttgtgctgagatattctgatcaagctcctgcatgtgtttgagaatttatattttgaagcaataaaaagaca |
318 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2326114 |
tttctcacttccttttttagtgcatcaatttgtgctgagatattctgatcaagctcctgcaagtgtttgagaatttatattttgaagcaataaaaagaca |
2326015 |
T |
|
| Q |
319 |
tttattgatgaaaaaatagagataacnnnnnnngacatttccaagggctcaacttcttgatgtttaatttagggtttgaacggatgataaataaag |
414 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
2326014 |
tttattgatgaaaaaatagagataacaaaaaaagacatttccaagggctcaactttttgatgtttaatttagggtttgaacggaagataaataaag |
2325919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 14267654 - 14267803
Alignment:
| Q |
19 |
tcaacagcctgaatagaacagaaagagtgcaaaggttgtcttgaagagttatttctccattttcaacatagctcttgtgaatgtattgcataacttcatc |
118 |
Q |
| |
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|||||| ||| ||||| |||| ||||| |||||||||||| |||| ||| |||||||||||||||| |||||||||||| | ||||| ||| ||||| |
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| T |
14267654 |
tcaacaccctaaatagcacagcaagagaaaaaaggttgtcttcaagaattacttctccattttcaacacagctcttgtgaacttgttgcaaaacatcatc |
14267753 |
T |
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| Q |
119 |
aatctcattttcgtaatgatagctcacacccaaacgacatatcgaatcaa |
168 |
Q |
| |
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||| || ||||| | ||||| |||||||||||||||||||| ||||||| |
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| T |
14267754 |
aatttctttttcaaagtgataactcacacccaaacgacatattgaatcaa |
14267803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 31159156 - 31158998
Alignment:
| Q |
19 |
tcaacagcctgaatagaacagaaagagtgcaaaggttgtcttgaagagt---tatttctccattttcaacatagctcttgtgaatgtattgcataacttc |
115 |
Q |
| |
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|||||| ||| ||||| |||| ||||| |||||||||||||| || | | |||||||||||||| |||||| |||| ||||| | ||||| ||| || |
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| T |
31159156 |
tcaacaacctaaatagcacagcaagagagcaaaggttgtcttcaaaaataattatttctccattttgaacataattcttatgaatatgttgcaaaacctc |
31159057 |
T |
|
| Q |
116 |
atcaatctcattttcgtaatgatagctcacacccaaacgacatatcgaatcaattaagt |
174 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
31159056 |
ttcaatctcattttcaaaatgatagctcacacccaaacgacatattgaatcaattaagt |
31158998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 49 - 280
Target Start/End: Complemental strand, 25832191 - 25831963
Alignment:
| Q |
49 |
aaaggttgtcttgaagagttatttctccattttcaacatagctcttgtgaatgtattgcataacttcatcaatctcattttcgtaatgatagctcacacc |
148 |
Q |
| |
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||||| |||||| |||| |||||||||||||||||||| |||| |||||||| | ||||| |||||| |||||||| ||||| ||||||| || ||||| |
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| T |
25832191 |
aaaggctgtctttaagaattatttctccattttcaacacagctgttgtgaatatgttgcaaaacttcgtcaatctcgttttcaaaatgataactaacacc |
25832092 |
T |
|
| Q |
149 |
caaacgacatatcgaatcaattaagttaattttttctgagggcttttcagtttttgagatattaaacatgtttctcacttccttttttagcgcatcaatt |
248 |
Q |
| |
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| ||||||||| |||||||| ||| | | |||| | | ||| | ||||||||||||| | ||||||||||||||| | ||||| | | | ||| |
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| T |
25832091 |
gagacgacatattgaatcaatcaaggtgagttttgccaatggcatctcagtttttgaga---gtagcatgtttctcacttcatcttttaatgtaacgatt |
25831995 |
T |
|
| Q |
249 |
tgtgctgagatattctgatcaagctcctgcat |
280 |
Q |
| |
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|| |||| |||||||||||||| |||||||| |
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| T |
25831994 |
tgggctgcaatattctgatcaagttcctgcat |
25831963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 174
Target Start/End: Complemental strand, 31198473 - 31198366
Alignment:
| Q |
67 |
ttatttctccattttcaacatagctcttgtgaatgtattgcataacttcatcaatctcattttcgtaatgatagctcacacccaaacgacatatcgaatc |
166 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||| | ||||| ||| || |||||||| ||||| | ||||| ||||||||||| || ||||| ||||| |
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| T |
31198473 |
ttatttctccattttgaacataattcttatgaatatgttgcaaaacctcttcaatctccttttcaaagtgataactcacacccaagcggcatattgaatc |
31198374 |
T |
|
| Q |
167 |
aattaagt |
174 |
Q |
| |
|
||| |||| |
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|
| T |
31198373 |
aatcaagt |
31198366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 41352216 - 41352325
Alignment:
| Q |
67 |
ttatttctccattttcaacatagctcttgtgaatgtatt--gcataacttcatcaatctcattttcgtaatgatagctcacacccaaacgacatatcgaa |
164 |
Q |
| |
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|||||||||||||||||||||| | |||||||| ||| ||| ||| || |||||||||| ||| |||||||||| | |||||||||||||| ||| |
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| T |
41352216 |
ttatttctccattttcaacataattattgtgaatatatgtagcaaaacctcttcaatctcatgttcaaaatgatagcttattcccaaacgacatattgaa |
41352315 |
T |
|
| Q |
165 |
tcaattaagt |
174 |
Q |
| |
|
||||| |||| |
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|
| T |
41352316 |
tcaatcaagt |
41352325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 25792095 - 25791942
Alignment:
| Q |
19 |
tcaacagcctgaatagaacagaaagagtgcaaaggttgtcttgaagagt---tatttctccattttcaacatagctcttgtgaatgtattgcataacttc |
115 |
Q |
| |
|
|||||| ||| ||||| |||| ||||| |||||||||||||| || ||| |||||||||||||| |||||| |||||||||| | ||||| || || |
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| T |
25792095 |
tcaacaacctaaatagcacagcaagagagcaaaggttgtcttcaaaagtaattatttctccattttgaacataattcttgtgaatatcttgcaaaatctc |
25791996 |
T |
|
| Q |
116 |
atcaatctcattttcgtaatgatagctcacacccaaacgacatatcgaatcaat |
169 |
Q |
| |
|
||||||||||| ||| |||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
25791995 |
atcaatctcatcttcaaaatgatagttcaaacccaaacggcatatcgaatcaat |
25791942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 17179281 - 17179144
Alignment:
| Q |
112 |
cttcatcaatctcattttcgtaatgatagctcacacccaaacgacatatcgaatcaattaagttaattttttctgagggcttttcagtttttgagatatt |
211 |
Q |
| |
|
|||||||||| |||| || |||||||| ||||||||||||||||||| |||||||| || | || |||| | |||| || ||| | ||||||| |
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| T |
17179281 |
cttcatcaatttcatgttgaaaatgatagttcacacccaaacgacatattgaatcaatcaaatgaacttttgcaaagggattctcaatctttgaga---c |
17179185 |
T |
|
| Q |
212 |
aaacatgtttctcacttccttttttagcgcatcaatttgtg |
252 |
Q |
| |
|
|| |||||| ||||||||||||||||| | |||||||||| |
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|
| T |
17179184 |
aatcatgttcctcacttccttttttagtgattcaatttgtg |
17179144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 25541671 - 25541743
Alignment:
| Q |
54 |
ttgtcttgaagagttatttctccattttcaacatagctcttgtgaatgtattgcataacttcatcaatctcat |
126 |
Q |
| |
|
||||||| | |||||| ||||| ||||||||||||| ||| ||||||| |||| |||||||||||| |||| |
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|
| T |
25541671 |
ttgtcttcacgagttaattctctattttcaacatagttctcatgaatgtgctgcaaaacttcatcaatttcat |
25541743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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