View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20420_low_1 (Length: 851)

Name: NF20420_low_1
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20420_low_1
NF20420_low_1
[»] chr1 (13 HSPs)
chr1 (362-834)||(12888184-12888660)
chr1 (13-239)||(12888783-12889012)
chr1 (367-453)||(12904782-12904868)
chr1 (704-834)||(12895247-12895372)
chr1 (23-98)||(12891277-12891352)
chr1 (585-647)||(12895380-12895442)
chr1 (761-821)||(12904355-12904415)
chr1 (361-452)||(12876531-12876622)
chr1 (515-573)||(12895503-12895561)
chr1 (391-453)||(12924903-12924965)
chr1 (761-834)||(12877091-12877164)
chr1 (531-573)||(12895803-12895847)
chr1 (368-408)||(12929833-12929873)
[»] chr6 (5 HSPs)
chr6 (746-809)||(6477672-6477735)
chr6 (746-809)||(6480724-6480787)
chr6 (746-809)||(6489093-6489156)
chr6 (746-809)||(6492145-6492208)
chr6 (360-451)||(21113932-21114023)


Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 362 - 834
Target Start/End: Complemental strand, 12888660 - 12888184
Alignment:
Q  362 ttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcattattattat 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12888660 ttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcattattattat 12888561  T
Q  462 tcaccttctttctttccannnnnnnnn--atcatttagtcaataatctttttaataaggaaaaataattgaatgaataaaagagggtttataaagggtaa 559  Q
    ||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12888560 tcaccttctttctttccatttttttttttatcatttagtcaataatctttttaataaggaaaaataattgaatgaataaaagagggtttataaagggtaa 12888461  T
Q  560 acatgaagatgtttaagggtttatattgtttggtggttaggaatcaatttttggtatgtcaatgccaatatttctctatgtttattgttaccaca--taa 657  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||    
T  12888460 acatgaagatgtttaagggtttatattgtttggttgttaggaatcaatttttggtatgtcaatgccaatatttctctatgtttattgtttccacacataa 12888361  T
Q  658 atatgtatttgttctagacttcaaatgtggataaataatgtctcagcacaatttgcatcaatctgttagtgtatagtatagaccttgtttatttggaacc 757  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12888360 atatgtatttgttctagacttcaaatgtggatagataatgtctcagcacaatttgcatcaatctgttagtgtatagtatagaccttgtttatttggaact 12888261  T
Q  758 tagtggtttttgaaaatatgcttgcagatggttccgagaaattttgtggacaagttttggaaagatgtaccaaatcc 834  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12888260 tagtggtttttgaaaatatgcttgcagatggttccgagaaattttgtggacaagttttggaaagatgtaccaaatcc 12888184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 12889012 - 12888783
Alignment:
Q  13 cacagacacacagttatgcttggtatggcaataacttgtaataaaaccggtttcttgaagggatcctttcaaaataaagagctggattggacaggctttt 112  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12889012 cacagatacacagttatgcttggtatggcaataacttgtaataaaaccggtttcttgaagggatcctttcaaaataaagagctggattggacaggct-tt 12888914  T
Q  113 ttctgcattttcgtattttctacacgtcacatgatgcctagaaagacttgtcaaactcaaatctaata---tttggtttggtgtac-ttctattttaact 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||| |||||    
T  12888913 ttctgcattttcgtattttctacatgtcacatgatgcctagaaagacttgtcaaactcaaatctaatatcttttggtttggtgtactttctattctaact 12888814  T
Q  209 tcttcaagttcgaccacagaagcaaagctaa 239  Q
    ||||||||||| |||||| ||||||||||||    
T  12888813 tcttcaagttctaccacataagcaaagctaa 12888783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 367 - 453
Target Start/End: Complemental strand, 12904868 - 12904782
Alignment:
Q  367 tatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcatt 453  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12904868 tatggacgtgggagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcatt 12904782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 704 - 834
Target Start/End: Complemental strand, 12895372 - 12895247
Alignment:
Q  704 cacaatttgcatcaatctgttagtgtatagtatagaccttgtttatttggaacctagtggtttttgaaaatatgcttgcagatggttccgagaaattttg 803  Q
    ||||||||||||||||||||||||     || ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||    
T  12895372 cacaatttgcatcaatctgttagt-----gtgtagaccttgtttatttggaacttagtggtttttgaaaatatgattgcagatggttccaagaaattttg 12895278  T
Q  804 tggacaagttttggaaagatgtaccaaatcc 834  Q
    |||| |||| ||||||||  ||| |||||||    
T  12895277 tggaaaagtattggaaaggagtatcaaatcc 12895247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 12891352 - 12891277
Alignment:
Q  23 cagttatgcttggtatggcaataacttgtaataaaaccggtttcttgaagggatcctttcaaaataaagagctgga 98  Q
    |||||||||||| || |||||||||||||| |||||||||||  || |||||||||||||||||||||||||||||    
T  12891352 cagttatgcttgttaaggcaataacttgtattaaaaccggttcattcaagggatcctttcaaaataaagagctgga 12891277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 585 - 647
Target Start/End: Complemental strand, 12895442 - 12895380
Alignment:
Q  585 ttgtttggtggttaggaatcaatttttggtatgtcaatgccaatatttctctatgtttattgt 647  Q
    ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  12895442 ttgtttggttgttaggactaaatttttggtatgtcaatgccaatatttctctatgtttattgt 12895380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 761 - 821
Target Start/End: Complemental strand, 12904415 - 12904355
Alignment:
Q  761 tggtttttgaaaatatgcttgcagatggttccgagaaattttgtggacaagttttggaaag 821  Q
    |||||||||||||| |||||| |||||||||| || |||||||||||||||| ||||||||    
T  12904415 tggtttttgaaaatgtgcttgaagatggttccaaggaattttgtggacaagtattggaaag 12904355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 361 - 452
Target Start/End: Original strand, 12876531 - 12876622
Alignment:
Q  361 gttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcat 452  Q
    ||||||||||| ||||||||||| ||| | ||||||||||| || | |||| |||||| |||| ||||||||||||| || || ||||||||    
T  12876531 gttcactatggccgtggaagtgatgctaagggaatgcatttctaccgaactattcaacttcgtgagttgcaagatcaagagctagtaagcat 12876622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 573
Target Start/End: Complemental strand, 12895561 - 12895503
Alignment:
Q  515 aaggaaaaataattgaatgaataaaagagggtttataaagggtaaacatgaagatgttt 573  Q
    ||||||||||||| |||||||||||| || | |||||||||||||||||||| ||||||    
T  12895561 aaggaaaaataatagaatgaataaaatagagcttataaagggtaaacatgaatatgttt 12895503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 453
Target Start/End: Complemental strand, 12924965 - 12924903
Alignment:
Q  391 ggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagcatt 453  Q
    ||||||||||||||||||||  |||||| |||| ||||||||||| |||| ||||||||||||    
T  12924965 ggaatgcatttttatctaaccattcaacttcgtgagttgcaagatgatgaacttgtaagcatt 12924903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 761 - 834
Target Start/End: Original strand, 12877091 - 12877164
Alignment:
Q  761 tggtttttgaaaatatgcttgcagatggttccgagaaattttgtggacaagttttggaaagatgtaccaaatcc 834  Q
    |||||||||||||| |||||||||||| |||| ||||||||||  || |  | ||||||||||||| |||||||    
T  12877091 tggtttttgaaaatgtgcttgcagatgattccaagaaattttgcagagagatattggaaagatgtatcaaatcc 12877164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 573
Target Start/End: Complemental strand, 12895847 - 12895803
Alignment:
Q  531 atgaataaaagagggtttataaagggtaa--acatgaagatgttt 573  Q
    |||||||||||||||||||||||||||||  ||||||||||||||    
T  12895847 atgaataaaagagggtttataaagggtaattacatgaagatgttt 12895803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 12929873 - 12929833
Alignment:
Q  368 atgggcgtggaagtgaagctcatggaatgcatttttatcta 408  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  12929873 atgggcgtggcagtgaagatcatggaatgcatttttatcta 12929833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 746 - 809
Target Start/End: Original strand, 6477672 - 6477735
Alignment:
Q  746 ttatttggaacctagtggtttttgaaaatatgcttgcagatggttccgagaaattttgtggaca 809  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||||  ||||||||| ||||||    
T  6477672 ttatttggaacttagtgatttttgaaaatatgcttgcatatggttctaagaaattttctggaca 6477735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 746 - 809
Target Start/End: Original strand, 6480724 - 6480787
Alignment:
Q  746 ttatttggaacctagtggtttttgaaaatatgcttgcagatggttccgagaaattttgtggaca 809  Q
    ||||||| ||| |||||||||||||||||||||||||| |||||||  ||||||||| ||||||    
T  6480724 ttatttgaaacttagtggtttttgaaaatatgcttgcatatggttctaagaaattttctggaca 6480787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 746 - 809
Target Start/End: Original strand, 6489093 - 6489156
Alignment:
Q  746 ttatttggaacctagtggtttttgaaaatatgcttgcagatggttccgagaaattttgtggaca 809  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||||  ||||||||| ||||||    
T  6489093 ttatttggaacttagtgatttttgaaaatatgcttgcatatggttctaagaaattttctggaca 6489156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 746 - 809
Target Start/End: Original strand, 6492145 - 6492208
Alignment:
Q  746 ttatttggaacctagtggtttttgaaaatatgcttgcagatggttccgagaaattttgtggaca 809  Q
    ||||||| ||| |||||||||||||||||||||||||| |||||||  ||||||||| ||||||    
T  6492145 ttatttgaaacttagtggtttttgaaaatatgcttgcatatggttctaagaaattttctggaca 6492208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 451
Target Start/End: Original strand, 21113932 - 21114023
Alignment:
Q  360 tgttcactatgggcgtggaagtgaagctcatggaatgcatttttatctaactgttcaacatcgtcagttgcaagatcatgaccttgtaagca 451  Q
    ||||||| |||||||||| ||||||||| | ||||||||||| ||||||||| |||||  ||  ||| |||| ||||| |||||||||||||    
T  21113932 tgttcacaatgggcgtgggagtgaagctaagggaatgcatttctatctaactattcaatttctccagatgcatgatcaagaccttgtaagca 21114023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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