View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_11 (Length: 394)
Name: NF20420_low_11
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 349
Target Start/End: Original strand, 8456186 - 8456513
Alignment:
| Q |
21 |
attgtggttgaccgaatgatctccgtgtgctttccctataaccaacctcactaactaattttatttatttttctatgcagacgaccaagggacaaaaacc |
120 |
Q |
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| T |
8456186 |
attgtggttgaccgaatgatctccgtgtgctttccctataaccaacctcactaactaattttatttatttt-ctatgcagacgaccaagggacaaaaacc |
8456284 |
T |
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| Q |
121 |
acctgaaactcacacacacaataacgaggtctcaggtgagtgcttgaaaattgattttatacaatcttgaatattgaattccttgttctactaacttagg |
220 |
Q |
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| T |
8456285 |
acctgaaactcacacacacaataacgaggtctcaggtgagtgcgtgaaaattgattttatacaatcttgaatattgaattccttgttctactaacttagg |
8456384 |
T |
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| Q |
221 |
ggacttgcttaatttcctttacctaattcttttttcaagtatctttgactaggatcaagcttaaatgttattggttagatcatatttcaattactctata |
320 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8456385 |
ggacttgcttaatttcctttagccaattcttttttcaagtatctttgactagcatcaagcttaaatgttattggttagatcatatttcaattactctata |
8456484 |
T |
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| Q |
321 |
tactattcagctcatcttctcatcaatcc |
349 |
Q |
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||||||| ||||||||||||||||||||| |
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| T |
8456485 |
tactattgagctcatcttctcatcaatcc |
8456513 |
T |
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