View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20420_low_15 (Length: 357)

Name: NF20420_low_15
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20420_low_15
NF20420_low_15
[»] chr3 (2 HSPs)
chr3 (1-200)||(15751494-15751693)
chr3 (137-221)||(26969583-26969667)
[»] chr2 (2 HSPs)
chr2 (168-221)||(15255980-15256033)
chr2 (168-221)||(15256753-15256806)
[»] chr1 (1 HSPs)
chr1 (164-221)||(14512783-14512840)
[»] chr6 (1 HSPs)
chr6 (163-221)||(14166897-14166955)


Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 15751494 - 15751693
Alignment:
Q  1 acgaataacaataacgggatctatcttaaaacaggtcagatcgagccaccatctaagcaagccatgtcgtaaccggattctaaacttcaaaaaccaaaac 100  Q
    ||||||||||| |||| ||||||||||||||||| ||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||||||     
T  15751494 acgaataacaacaacgagatctatcttaaaacagctcaaatcgagccatcatctaagcaagtcgtgtcgtaaccggattctaaacttcaaataccaaaat 15751593  T
Q  101 caatcggagtgatgccaccagagagttgtcataacc-aaactttacaatttttactgaagtttatttaaatttatgcttacttatataccaaataattta 199  Q
    || |||||  |||||||||  |||| | |||||||| |||||||||||||| |||| || ||||||||||||||||||| || |||||||||||||||||    
T  15751594 cattcggaacgatgccacc-cagagctctcataaccgaaactttacaatttgtactaaaatttatttaaatttatgcttgctaatataccaaataattta 15751692  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 26969667 - 26969583
Alignment:
Q  137 aaactttacaatttttactgaagtttatttaaatttatgcttacttatataccaaataatttaaatatacactaattttgtgtga 221  Q
    |||||||||||||| ||||  ||||  ||||||||| || | ||||||||  ||||||| ||||||||||  |||||||||||||    
T  26969667 aaactttacaatttatactatagttactttaaatttttgttaacttatatgtcaaataacttaaatatactataattttgtgtga 26969583  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 15255980 - 15256033
Alignment:
Q  168 aatttatgcttacttatataccaaataatttaaatatacactaattttgtgtga 221  Q
    |||||||||| ||||| ||  |||||||||||||||||||||||||||||||||    
T  15255980 aatttatgctgacttacatgacaaataatttaaatatacactaattttgtgtga 15256033  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 15256753 - 15256806
Alignment:
Q  168 aatttatgcttacttatataccaaataatttaaatatacactaattttgtgtga 221  Q
    |||||||||| ||||| ||  ||||||||||||| |||||||||||||| ||||    
T  15256753 aatttatgctgacttacatgacaaataatttaaaaatacactaattttgggtga 15256806  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 14512783 - 14512840
Alignment:
Q  164 tttaaatttatgcttacttatataccaaataatttaaatatacactaattttgtgtga 221  Q
    |||||| ||||||| ||||||||  ||||||| ||||||||||||||||||| |||||    
T  14512783 tttaaaattatgctgacttatatgtcaaataacttaaatatacactaattttttgtga 14512840  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 14166955 - 14166897
Alignment:
Q  163 atttaaatttatgcttacttatataccaaataatttaaatatacactaattttgtgtga 221  Q
    ||||||||||||||||| |||| |  ||||||| |||||||  ||||||||||||||||    
T  14166955 atttaaatttatgcttatttatttgtcaaataacttaaatactcactaattttgtgtga 14166897  T

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