View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_18 (Length: 337)
Name: NF20420_low_18
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 21924409 - 21924092
Alignment:
| Q |
1 |
aaaattggggggaaaatggctgcaccgttcaagatatacacgaagagtaatctgctactgttgaataat-----------------atgtctgaaaataa |
83 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| || | || ||| || |
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| T |
21924409 |
aaaattggggggaaaatggctgcaccattcaagacatacacgaagagtaatctgctactgctgaataatgtctgaaactcctaaacatctttgcaaacaa |
21924310 |
T |
|
| Q |
84 |
tttctgctctgaacgaaaacaatttctgctcgaattagcacaaactcttgccttttaatactgaaaataacttgctgtagggaaaatagagcagcacata |
183 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| || |||||||||||||||||| |
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| T |
21924309 |
caactgctctgaacgaaaacaatttctgctcgaattagtacaaactctttccttttaatactgaaa-taacttgctgcagaaaaaatagagcagcacata |
21924211 |
T |
|
| Q |
184 |
agtattttgaatccccaaatttatttcacgacttaatgctgaaaatacatacaatctcaaaaataaaaccaatttgttgagctttaaaccattttttgaa |
283 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
21924210 |
agtattttgaatccccaaatttatttcacaacttaatgctgaacatacatacaatctcaaaaataaaaccaatttgttgagctttaatccattctttgaa |
21924111 |
T |
|
| Q |
284 |
atccagaagtaaaatcaag |
302 |
Q |
| |
|
||| ||||||||||||||| |
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| T |
21924110 |
atctagaagtaaaatcaag |
21924092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39483783 - 39483861
Alignment:
| Q |
1 |
aaaattggggggaaaatggctgcaccgttcaagatatacacgaagagtaatctgctactgttgaataatatgtctgaaa |
79 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39483783 |
aaaattggggggaaaatggctgcaccgttcaagatatacacgaagagtaatctgctactgttaaataatatgtctgaaa |
39483861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 286
Target Start/End: Complemental strand, 26844216 - 26844085
Alignment:
| Q |
145 |
tgaaaataacttgctgtagggaaaatagagcagcacataagtattttgaatccccaaatttatttcacgacttaatgctgaaaatacatacaatctcaaa |
244 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| |||||||||| |||||||| || ||||||| |||||||| ||||||||| ||| |
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| T |
26844216 |
tgaaaataacttactgcagggaaaatagagcagcacataagtgttttgaatcctcaaatttagtttacgactt-ttgctgaaa----atacaatctaaaa |
26844122 |
T |
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| Q |
245 |
aataaaaccaatttgttgagctttaaaccattttttgaaatc |
286 |
Q |
| |
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||| ||||| ||||||||||| ||||||||||||||| |
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| T |
26844121 |
aat-----taatttattgagctttaagccattttttgaaatc |
26844085 |
T |
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