View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_19 (Length: 335)
Name: NF20420_low_19
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 113 - 308
Target Start/End: Complemental strand, 35105302 - 35105107
Alignment:
| Q |
113 |
aagttaagttagccaacttaaattggcaccggaagaacgaatttcgagatatcgaggatgagcacactctcaggtcttaagccaataccatcagatcaac |
212 |
Q |
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| T |
35105302 |
aagttaagttagccaacttaaattggcaccggaagaacgaattccgagatatcgaggatgagcacactctcaggtcttaagccaataccatcagatcaac |
35105203 |
T |
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| Q |
213 |
tcaaatgaatttaattacaactatataattaaacacgagcaatatcatggatgagtcaaactaattttattttaagttcatcgacgcatatcttga |
308 |
Q |
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| T |
35105202 |
tcaaatgagtttaattacaactatataattaaacacgagcaatatcatggatgagtcaaactaattttattttaagttcatcgacgcatatcttga |
35105107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 49225440 - 49225495
Alignment:
| Q |
157 |
cgagatatcgaggatgagcacactctcaggtcttaagccaataccatcagatcaac |
212 |
Q |
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| T |
49225440 |
cgagacatcgaggaagagcacactctcaggccttaagccaacaccaccagaccaac |
49225495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 22429659 - 22429609
Alignment:
| Q |
170 |
atgagcacactctcaggtcttaagccaataccatcagatcaactcaaatga |
220 |
Q |
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| T |
22429659 |
atgagcacactcttaggtctcaagtcaataccaccagatcaacttaaatga |
22429609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 46545768 - 46545732
Alignment:
| Q |
166 |
gaggatgagcacactctcaggtcttaagccaatacca |
202 |
Q |
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| T |
46545768 |
gaggaggagcacactctcaggtctcaagccaatacca |
46545732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 113 - 308
Target Start/End: Original strand, 6164796 - 6164993
Alignment:
| Q |
113 |
aagttaagttagccaacttaaattggcaccggaagaacgaatttcgagatat--cgaggatgagcacactctcaggtcttaagccaataccatcagatca |
210 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
6164796 |
aagttaagttagccagcttaaattggcaccggaagaacgaatttcgagatatatcgaggatgagcacactctcaggtctcaggtcaataccatcagatca |
6164895 |
T |
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| Q |
211 |
actcaaatgaatttaattacaactatataattaaacacgagcaatatcatggatgagtcaaactaattttattttaagttcatcgacgcatatcttga |
308 |
Q |
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| T |
6164896 |
actcaaatgagtttaattacaactatataattaaacacgagcaatatcatggatgagtcaaactaattttattttaagttcatcgacgcatattttga |
6164993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 29115058 - 29115101
Alignment:
| Q |
237 |
ataattaaacacgagcaatatcatggatgagtcaaactaatttt |
280 |
Q |
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| T |
29115058 |
ataattaaacacaaacaaaatcatggatgagtcaaactaatttt |
29115101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 24191903 - 24191845
Alignment:
| Q |
158 |
gagatatcgaggatgagcacactctcaggtcttaagccaataccatcagatcaactcaa |
216 |
Q |
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||||| || |||| ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
24191903 |
gagatctcaaggaggagcacactctcaggtcccaagccaataccatcaggccaactcaa |
24191845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 18372321 - 18372280
Alignment:
| Q |
164 |
tcgaggatgagcacactctcaggtcttaagccaataccatca |
205 |
Q |
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||||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
18372321 |
tcgaggatgagcatactctcaggtctcaagtcaataccatca |
18372280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 19016090 - 19016042
Alignment:
| Q |
164 |
tcgaggatgagcacactctcaggtcttaagccaataccatcagatcaac |
212 |
Q |
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||||||| |||||||||| || |||| ||||||||||||||||| |||| |
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| T |
19016090 |
tcgaggaggagcacactcccaagtctcaagccaataccatcagaccaac |
19016042 |
T |
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