View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20420_low_2 (Length: 705)

Name: NF20420_low_2
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20420_low_2
NF20420_low_2
[»] chr8 (40 HSPs)
chr8 (16-433)||(25470132-25470543)
chr8 (16-433)||(25408045-25408460)
chr8 (16-433)||(24889886-24890298)
chr8 (16-433)||(25331355-25331767)
chr8 (16-433)||(25428575-25428987)
chr8 (16-433)||(25826001-25826397)
chr8 (20-391)||(25711144-25711518)
chr8 (16-391)||(25501314-25501685)
chr8 (16-237)||(25486164-25486385)
chr8 (16-237)||(25688501-25688722)
chr8 (290-605)||(25667922-25668215)
chr8 (16-232)||(25379975-25380194)
chr8 (16-237)||(25635589-25635810)
chr8 (428-587)||(24889691-24889850)
chr8 (16-181)||(25730963-25731128)
chr8 (428-599)||(25502022-25502194)
chr8 (428-587)||(25429024-25429183)
chr8 (16-183)||(25599540-25599707)
chr8 (428-599)||(25470579-25470758)
chr8 (394-556)||(25501793-25501958)
chr8 (16-169)||(24916860-24917013)
chr8 (79-232)||(25667707-25667860)
chr8 (16-169)||(25433731-25433884)
chr8 (89-430)||(25687469-25687795)
chr8 (17-185)||(22880419-22880587)
chr8 (428-557)||(25687830-25687956)
chr8 (428-526)||(25826429-25826527)
chr8 (20-178)||(23262254-23262412)
chr8 (428-552)||(25408497-25408619)
chr8 (482-581)||(25331851-25331950)
chr8 (430-547)||(25380412-25380528)
chr8 (433-500)||(25711588-25711654)
chr8 (322-433)||(25380267-25380376)
chr8 (322-413)||(25486445-25486537)
chr8 (336-429)||(25636110-25636199)
chr8 (535-582)||(25711667-25711714)
chr8 (435-526)||(25486535-25486625)
chr8 (430-526)||(25688919-25689014)
chr8 (428-463)||(25501755-25501790)
chr8 (322-381)||(25688791-25688850)
[»] scaffold0070 (3 HSPs)
scaffold0070 (16-181)||(25307-25472)
scaffold0070 (16-237)||(40941-41164)
scaffold0070 (430-526)||(40651-40748)
[»] chr4 (5 HSPs)
chr4 (16-237)||(10332262-10332483)
chr4 (364-433)||(10332544-10332613)
chr4 (602-631)||(4946347-4946376)
chr4 (597-634)||(36315461-36315498)
chr4 (597-634)||(36329670-36329707)
[»] chr1 (3 HSPs)
chr1 (16-185)||(23394063-23394235)
chr1 (597-631)||(42438839-42438873)
chr1 (604-633)||(24780695-24780724)
[»] scaffold0746 (1 HSPs)
scaffold0746 (59-181)||(4445-4567)
[»] chr2 (3 HSPs)
chr2 (490-599)||(40025686-40025796)
chr2 (434-464)||(30932676-30932706)
chr2 (557-599)||(40024335-40024377)
[»] scaffold0009 (1 HSPs)
scaffold0009 (603-631)||(193873-193901)
[»] chr5 (1 HSPs)
chr5 (603-631)||(40835872-40835900)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 25470132 - 25470543
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| | ||||||||||    
T  25470132 ctcatcacaagttacaccaacccaattgcatacagaagaggaggttgaccaattcttagacaagatatcataagggtctgaagtaatgagggatttgaat 25470231  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       |||||| |||||||     
T  25470232 gctagaagagcatattgatctgttgtgatgttttttgtattcacagctaagcaagccacaaaacaatgcaatgatagcaaaaaaagtaagatacaagata 25470331  T
Q  216 atagattcaccatttttccttannnnnnnnnnnnngatatgagagatgaggcaagggactggtagtgatgataaatagtggtttaaaaatgaatttccta 315  Q
    ||||||||||||||||||||||                |||||||| || ||||||||||| ||| ||||||| |||||||||||||||||| ||||| |    
T  25470332 atagattcaccatttttccttaaagtgtgtgg------atgagagacgatgcaagggactgatagggatgatatatagtggtttaaaaatgagtttccca 25470425  T
Q  316 tgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcataccgagagtgttggtaggggcagt 415  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  25470426 cgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattcttatatcgagagtgttggtaggggcagt 25470525  T
Q  416 gcttcaaatcaaccaagt 433  Q
    ||||||||||||||||||    
T  25470526 gcttcaaatcaaccaagt 25470543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 25408045 - 25408460
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |||||||||||||| | ||||||||||    
T  25408045 ctcatcacaagtgacaccaacccaattgcatacaaaagaggaggttgaccaattcttagacaagatatcataagggtctgaagtaatgagggatttgaat 25408144  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||     
T  25408145 gctagaagagcagattgatctgttgtgatgttttttgtattcacagctaagcaagccacaaaacaatgcaatgatagcaaaaaaagtaagagacaagata 25408244  T
Q  216 atagattcaccatttttccttannnnnnnnnnnnngatatgagagatg-aggcaagggactggtagtgatgataaatagtggtttaaaaatgaat---tt 311  Q
    ||||||||||||||||||||                  |||||||| | ||||||||||||| ||| ||||||| |||||| ||||||||||| |   ||    
T  25408245 atagattcaccatttttcctcggagtgtgtgg------atgagagacgaaggcaagggactgatagggatgatatatagtgctttaaaaatgagtttatt 25408338  T
Q  312 cctatgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcataccgagagtgttggtagggg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25408339 cctatgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcatatcgagagtgttggtagggg 25408438  T
Q  412 cagtgcttcaaatcaaccaagt 433  Q
    ||||||||||||||||||||||    
T  25408439 cagtgcttcaaatcaaccaagt 25408460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 24890298 - 24889886
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    ||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  24890298 ctcatcacaagtgacaccaacccaagtgcatacaggagaggatgttgaccaattattagacaacatatcataggggtctgaagtaattagtgatttgaat 24890199  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | || ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |       ||||||||| ||||     
T  24890198 gctaaaagtgaagattgatcagttgtgatgttttttgtattcgtagctaagcaagccacaaaacaatgcaatgatatcaaaaaaagtaagagacgagata 24890099  T
Q  216 atagattcaccatttttccttannnnnnnnnnnnngatatgagagatgaggcaagggactggtag--tgat-gataaatagtggtttaaaaatgaatttc 312  Q
    ||| ||||||||||||||||||               |||||||||  ||||||||| ||| | |  ||||  ||| |||||||||||||||||| ||||    
T  24890098 atacattcaccatttttccttagtgtgtg--------tatgagagacaaggcaaggggctgatgggatgatacatatatagtggtttaaaaatgagtttc 24890007  T
Q  313 ctatgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcataccgagagtgttggtaggggc 412  Q
    ||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24890006 ctacgctattattaataatattaacgtttatttcactctctacttttcgtcattttgtgtaaatgtgatagattctcataccgagagtgttggtaggggc 24889907  T
Q  413 agtgcttcaaatcaaccaagt 433  Q
    |||||||||||||||||||||    
T  24889906 agtgcttcaaatcaaccaagt 24889886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 25331355 - 25331767
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||| |||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |||    
T  25331355 ctcatcacaagttacaccagcccaattacatacagaagaggatgttgaccaattattagacaacatatcataggggtctgaagtaatgagggatttaaat 25331454  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        |||||||| ||||     
T  25331455 gctagaagagcagattgatctgttgtgatgttttttgtattcgtagctaagcaagccacaaaacaatgcaatgatagcaaaaaaaataagagacgagata 25331554  T
Q  216 atagattcaccatttttccttannnnnnnnnnnnngatatgagagatgaggcaagggactggtagtgatgataaatagtggtttaaaaatgaatttccta 315  Q
    ||||||||||||||||||||||             |  |||||||| ||||||| | ||||||   ||||||| |||||||||||||||||| ||| |||    
T  25331555 atagattcaccatttttcctta-----gtgtgtgtggaatgagagacgaggcaaagaactggtgaggatgatagatagtggtttaaaaatgagtttacta 25331649  T
Q  316 tgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcataccgagagtgttggtaggggcagt 415  Q
     ||||||||||  | |||| ||||||||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  25331650 cgctattattagtagtattaacgtttatttcactctctaattttcgtcattttatgtaaatgggagagattctcataccgagagtgttggtaggggcagt 25331749  T
Q  416 gcttcaaatcaaccaagt 433  Q
    ||||||||||||||||||    
T  25331750 gcttcaaatcaaccaagt 25331767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 25428575 - 25428987
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  25428575 ctcatcgcaagtgacaccaacccaagtgcatacagaagaggatgttgaccaattattagacaacatatcataggggtctgaagtaattagtgatttgaat 25428674  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | || ||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |       ||||||||| ||||     
T  25428675 gctaaaagggcagattggtcagttgtgatgttttttgtattggtagctaagcaagccacaaaacaatgcaatgatatcaaaaaaagtaagagacgagata 25428774  T
Q  216 atagattcaccatttttccttannnnnnnnnnnnngatatgagagatgaggcaagggactggtag--tgat-gataaatagtggtttaaaaatgaatttc 312  Q
    ||| ||||||||||||||||||               |||||||||  ||||||||| ||| | |  ||||  ||| |||||||||||||||||| ||||    
T  25428775 atacattcaccatttttccttagtgtgtg--------tatgagagacaaggcaaggggctgatgggatgatacatatatagtggtttaaaaatgagtttc 25428866  T
Q  313 ctatgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcataccgagagtgttggtaggggc 412  Q
    ||| ||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25428867 ctacgctattattaataatattaacgtttatttcactctctacttttcgtcattttgtgtaaatgtgatagattctcataccgagagtgttggtaggggc 25428966  T
Q  413 agtgcttcaaatcaaccaagt 433  Q
    |||||||||||||||||||||    
T  25428967 agtgcttcaaatcaaccaagt 25428987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 25826001 - 25826397
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    ||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  25826001 ctcatcacaagcgacaccaacccaagtgcatacagaagaggatgttgaccaattattagacaacatatcataggggtctgaagtaattagtgatttgaat 25826100  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | |||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||    
T  25826101 gctagaagagcagattgatcagttgtgatggtttttggattcgcaactaagcaagccacaaaacaatgcaatgatagcaaaaaaagtaagagacaagatg 25826200  T
Q  216 atagattcaccatttttccttannnnnnnnnnnnngatatgagagatgaggcaagggactggtagtgatgataaatagtggtttaaaaatgaatttccta 315  Q
    ||||||||||||||||||||||               ||||||||| || | ||||||||| ||| ||||||| |||||| ||||||||||| |||||||    
T  25826201 atagattcaccatttttccttagtgtgtgtg------tatgagagacgatgtaagggactgatagggatgatatatagtgctttaaaaatgagtttccta 25826294  T
Q  316 tgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcataccgagagtgttggtaggggcagt 415  Q
    ||||||         ||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  25826295 tgctat---------tattgacgtt------actctccacttttcgtcattttgtgtaaatgtgagagattctcataccgagagtgtcggtagtggcagt 25826379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 25711144 - 25711518
Alignment:
Q  20 tcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaatgata 119  Q
    |||||||| |||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||| ||    
T  25711144 tcacaagttacaccaacccaattgcatacagaagatgcagttgaccaattattagacaacatatcataagggtctgaagtaattagtgatttgaatgcta 25711243  T
Q  120 gaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatgatag 219  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||| || |||| ||||    
T  25711244 gaagagcatgttgatcagttgtgatgttttttgtattcgcagctaagcaagccacataacaatgcaatgatagagaaaaaagtaagaaacgagataatag 25711343  T
Q  220 attcaccatttttccttannnnnnnnnnnnngatatgagagatgaggcaagggactggtagtgatgataaatagtggtttaaaaatgaatttcctatgct 319  Q
    ||||||||||||||||||                ||||||||  ||||||||||||| ||| ||||||| |||||| ||||||||||| ||||||| |||    
T  25711344 attcaccatttttccttagtatgtgtgg------atgagagacaaggcaagggactgatagggatgatatatagtgctttaaaaatgagtttcctacgct 25711437  T
Q  320 at---------tattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcat 391  Q
    ||         || ||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25711438 atcatcaataataataataatattaacatttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcat 25711518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 25501314 - 25501685
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    ||||||||||||||||||||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  25501314 ctcatcacaagtgacaccaacccaagtgcatacatgagaggatgttgaccaattattagacaacatatcataggggtctgaagtaattagtgatttgaat 25501413  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | || ||| | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |       ||||||||| ||||     
T  25501414 gctaaaagtgaagattgatcagttgtgatgttttttgtattggtagctaagcaagccacaaaacaatgcaatgatatcaaaaaaagtaagagacgagata 25501513  T
Q  216 atagattcaccatttttccttannnnnnnnnnnnngatatgagagatgaggcaagggactggtagtgatgata-----aatagtggtttaaaaatgaatt 310  Q
    ||| ||||||||||||| ||||               ||||||||| |||||||||| ||| | | ||| |||     | ||||||||||||||||| ||    
T  25501514 atacattcaccattttttcttagtgtgtg--------tatgagagacgaggcaaggggctgat-gggataatacatatactagtggtttaaaaatgagtt 25501604  T
Q  311 tcctatgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcat 391  Q
    |||||  |||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  25501605 tcctacactatcattaataatattaacgtttatttcactctccatttttcgtcattttgtgtaaatgtgatagagtctcat 25501685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 25486164 - 25486385
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  25486164 ctcatcacaagtgacaccaacccaactgcacacagaagaggaggttgaccaattattagccaacatatcataggggtctgaagtaattaaagatttgaat 25486263  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | || |||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| |       ||||||||||||||     
T  25486264 gctataagagcggattgatcagttgtgctgttttttgtattcgaagctaagcaagctacaaaacaatgcaatgataacaaaaaaagtaagagacaagata 25486363  T
Q  216 atagattcaccatttttcctta 237  Q
    ||| ||||||||||||||||||    
T  25486364 atatattcaccatttttcctta 25486385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 25688501 - 25688722
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||| |||||||||||| | |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  25688501 ctcatcacaagttacaccaacccaactacatacagaagaggatgttgaccaattattagccaacatatcataggggtctgaagtaattaaagatttgaat 25688600  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |       ||||||||||||||     
T  25688601 gctagaagagcagattgatccgttgtgatgtttttcgtattcgcagctaagcaagccacaaaatagtgcaatgataacaaaacaagtaagagacaagata 25688700  T
Q  216 atagattcaccatttttcctta 237  Q
    ||||||||||||||||||||||    
T  25688701 atagattcaccatttttcctta 25688722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 290 - 605
Target Start/End: Original strand, 25667922 - 25668215
Alignment:
Q  290 atagtggtttaaaaatgaatttcctatgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctc 389  Q
    ||||||||| |||||||| ||||||| || |||||||| |||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  25667922 atagtggttaaaaaatgagtttcctaagcgattattaataatattaacgattatttcactctccattttttgtcattttgtgtaaatgtgagagattctc 25668021  T
Q  390 ataccgagagtgttggtaggggcagtgcttcaaatcaaccaagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtata-gcgtacataattg 488  Q
    || | |||||||               ||| ||||||||||||||||||||||||||||||||||  ||||||| |||| |||||| ||||||| |||||    
T  25668022 atgcagagagtg---------------cttaaaatcaaccaagttgcaatttaaaagtcagtcaacaaaaaaaggacaagagtataagcgtacaaaattg 25668106  T
Q  489 catggaaaattccaatgcgtccaacaataattcattacaatccgacgatgactattaagcattgattttctacctcttaattctcatcttcgcgcattca 588  Q
    |||||||||||| |   | ||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25668107 catggaaaattcta---cctct-----taattcattacaatccgacgatgactattaagcattgattttctacctcttaattctcatcttcgcgcattca 25668198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 25379975 - 25380194
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||||||    
T  25379975 ctcatcacaagttacaccaacccaattgcatacagaagaggaggttgaccaattattagccaacatatcatatgggtctgaagtaatcagggatttgaat 25380074  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagc---nnnnnnngtaagagacaag 212  Q
    | ||||||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |          ||||||||||||    
T  25380075 gctagaagaacatgttgatcagttgtgatgttttttatattcgcagctaagcaagccacaaaacaatgcaatgataacaaaacaattagtaagagacaag 25380174  T
Q  213 atgatagattcaccattttt 232  Q
    || |||||||||||||||||    
T  25380175 ataatagattcaccattttt 25380194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 25635589 - 25635810
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    ||||||||||||||||||||||||| | |||||| |||| |  |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||    
T  25635589 ctcatcacaagtgacaccaacccaactacatacataagatgtagttgaccaattattagacaaaatatcataggggtctgaagtaattagtgatttgaat 25635688  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | ||| |||||| ||||||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||       ||||||| |||||||    
T  25635689 gctaggagagcatattgatctgttgtgatgttttttgtatacgtagctaagctagccacaaaacaatgcaatgatagcaaaaaaagtaagaggcaagatg 25635788  T
Q  216 atagattcaccatttttcctta 237  Q
    ||||||||||||||||||||||    
T  25635789 atagattcaccatttttcctta 25635810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 428 - 587
Target Start/End: Complemental strand, 24889850 - 24889691
Alignment:
Q  428 ccaagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataattgcatggaaaattccaatgcgtccaacaataattcattaca 527  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||  |||||| |||||||||||||     
T  24889850 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaagagtatagcgtacataattgcatggaaaattctaatatgtccaagaataattcattact 24889751  T
Q  528 atccgacgatgactattaagcattgattttctacctcttaattctcatcttcgcgcattc 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24889750 atccgacgatgactattaagcattgattttctacctcttaattctcatcttcgcgcattc 24889691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 25730963 - 25731128
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||     
T  25730963 ctcatcacaagttacaccaacccaattgcatacagaagaggaagttgaccaattattagccaacacatcataagggtctgaagtaattagggatttgaaa 25731062  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaa 181  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  25731063 gctagaagagcagattgatcagttgtgatgttttttgtatttgcagctaagcaagcaataaaacaa 25731128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 428 - 599
Target Start/End: Original strand, 25502022 - 25502194
Alignment:
Q  428 ccaagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataa-ttgcatggaaaattccaatgcgtccaacaataattcattac 526  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||| |||| ||||||| | |||| |||||    
T  25502022 ccaagttgcaatttaaaagtcagtcaaggaaaaaaggacaaaactatagcgtacataaattgcatggaaaattctaatgtgtccaacgaaaatttattac 25502121  T
Q  527 aatccgacgatgactattaagcattgattttctacctcttaattctcatcttcgcgcattcacgttgttatgt 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  25502122 aatccgacgatgactattaagcattgattttctacctcttaattctcatcttcgcggattcttgttgttatgt 25502194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 428 - 587
Target Start/End: Original strand, 25429024 - 25429183
Alignment:
Q  428 ccaagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataattgcatggaaaattccaatgcgtccaacaataattcattaca 527  Q
    |||||||||||||||||||||||||||  ||| ||| |||| ||||||||||||||||||||||||||||||| |||  |||||| |||||||||||||     
T  25429024 ccaagttgcaatttaaaagtcagtcaagaaaagaaggacaagagtatagcgtacataattgcatggaaaattctaatatgtccaagaataattcattact 25429123  T
Q  528 atccgacgatgactattaagcattgattttctacctcttaattctcatcttcgcgcattc 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25429124 atccgacgatgactattaagcattgattttctacctcttaattctcatcttcgcgcattc 25429183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 25599540 - 25599707
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  25599540 ctcatcacaagttacaccagcccaagtgcatacagaagaggaggttgaccaattattagccaacatatcataggggtctgaagtaattagggatttgaat 25599639  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatg 183  Q
    | || ||||||| || |||| ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  25599640 gctataagagcatatagatctgttgtgatgttttttgtattcgcagttaagcaagacacaaaacaatg 25599707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 428 - 599
Target Start/End: Original strand, 25470579 - 25470758
Alignment:
Q  428 ccaagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataattgcatggaaaattccaatgcgtccaacaataattcattaca 527  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  25470579 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattccaatatgtccaacaataattcattaca 25470678  T
Q  528 atccgacgatgactattaagcat--------tgattttctacctcttaattctcatcttcgcgcattcacgttgttatgt 599  Q
    |||||||||| |||| |||||||        |||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  25470679 atccgacgattactagtaagcattgatttaatgattttctacctcttaattctcaccttcgcggattcatgttgttatgt 25470758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 394 - 556
Target Start/End: Original strand, 25501793 - 25501958
Alignment:
Q  394 cgagagtgttggtaggggcagtgcttcaaatc----aaccaagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataattgc 489  Q
    ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25501793 cgagagtgttggtaggggcagtgcttcaaatcaatcaaccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgc 25501892  T
Q  490 atggaaaattccaatgcgtccaacaataattcattacaatccgacgatgactattaagcattgattt 556  Q
    ||||||||||| |||| |||||||||||||||||||||| | || ||||||||| ||||||||||||    
T  25501893 atggaaaattctaatgtgtccaacaataattcattacaacctga-gatgactatcaagcattgattt 25501958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 24917013 - 24916860
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||||||     
T  24917013 ctcatcacaagttacaccaacccaagtgcatacggaagaggaggttgaccaattattagccaacgtaccataggggtctgaagtaattagggatttgaaa 24916914  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaa 169  Q
    | || ||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  24916913 gctataagagcagattgatctgttgtgatgttttttgtattcgcagttaagcaa 24916860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 25667707 - 25667860
Alignment:
Q  79 catatcataggggtctgaagtaattaaggatttgaatgatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaa 178  Q
    ||||||||||||||||||||||||||  |||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25667707 catatcataggggtctgaagtaattagtgatttgaatgctagaagtgcagattgatctgttgtgatgttttttgtattcgcagctaagcaagccacaaaa 25667806  T
Q  179 caatgcaatgatagcnnnnnnngtaagagacaagatgatagattcaccattttt 232  Q
    |||||||||||||||       ||||||||| |||| |||||||||||||||||    
T  25667807 caatgcaatgatagcaaaaaaagtaagagacgagataatagattcaccattttt 25667860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 16 - 169
Target Start/End: Original strand, 25433731 - 25433884
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||| ||||| |||||| ||||||||||||||||  |||||||||    
T  25433731 ctcatcacaagttacaccaatccaattgcatacggaagatgaggttgaccaattattagccaacacatcataagggtctgaagtaattagagatttgaat 25433830  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaa 169  Q
    | |||||||||| |||||||||| ||||||||||||||||| ||||||||||||    
T  25433831 gctagaagagcatattgatcagtggtgatgttttttgtatttgcagctaagcaa 25433884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 89 - 430
Target Start/End: Original strand, 25687469 - 25687795
Alignment:
Q  89 gggtctgaagtaattaaggatttgaatgatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatg 188  Q
    |||||||||||||| | ||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  25687469 gggtctgaagtaatcagggatttgaaagctagtagagcagattgatcagttgtgatgttttttgtattcacagctaagcaagccacaaaacaatgcagtg 25687568  T
Q  189 atagcnnnnnnngtaagagacaagatgatagattcaccatttttccttannnnnnnnnnnnngatatgagagatgaggcaagggactg--gtagtgatga 286  Q
    |||||       |||| |||| ||||||||||||||||||||||| |||                  || ||| ||||||||| ||||   ||| |||||    
T  25687569 atagcaaaaaaagtaatagacgagatgatagattcaccatttttctttagtgcgtg-----------gatagaagaggcaaggtactgatatagggatga 25687657  T
Q  287 taaatagtggtttaaaaatgaatttcctatgctattattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagatt 386  Q
    || ||||||||||||||| || ||||||| ||||||||     ||||| ||   |||||||||| ||||  |||||||||||||||||||||||||||||    
T  25687658 tatatagtggtttaaaaacgattttcctacgctattat-----atattaac-aatatttcactccccac--ttcgtcattttgtgtaaatgtgagagatt 25687749  T
Q  387 ctcataccgagagtgttggtaggggca---gtgcttcaaatcaacca 430  Q
    ||||||| |||||||||||| ||||||   ||| |||||||||||||    
T  25687750 ctcatacagagagtgttggt-ggggcataggtggttcaaatcaacca 25687795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 22880587 - 22880419
Alignment:
Q  17 tcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaatg 116  Q
    ||||||||||| |||||||||||| |||||| || |||||| |||||||||||||||| ||| ||||||||||| ||||||||||| |  ||||||||||    
T  22880587 tcatcacaagttacaccaacccaactgcatataggagaggatgttgaccaattattagccaaaatatcatagggatctgaagtaataagtgatttgaatg 22880488  T
Q  117 atagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgca 185  Q
     |||||||||| ||| ||| || ||||||||||||||||| | |||||||||||| || ||||||||||    
T  22880487 ctagaagagcatatttatctgtagtgatgttttttgtatttgaagctaagcaagcaacgaaacaatgca 22880419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 428 - 557
Target Start/End: Original strand, 25687830 - 25687956
Alignment:
Q  428 ccaagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataattgcatggaaaattccaatgcgtccaacaataattcattaca 527  Q
    |||| |||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||    
T  25687830 ccaatttgcaacttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacaaaattgcatggaaaattctaatgtgtccaacaataattcattaca 25687929  T
Q  528 atccgacgatgactattaagcattgatttt 557  Q
    |   ||||||||| ||||||||||||||||    
T  25687930 a---gacgatgaccattaagcattgatttt 25687956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 428 - 526
Target Start/End: Original strand, 25826429 - 25826527
Alignment:
Q  428 ccaagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataattgcatggaaaattccaatgcgtccaacaataattcattac 526  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  25826429 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatgtgtccaacaataattcattac 25826527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 23262254 - 23262412
Alignment:
Q  20 tcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaatgata 119  Q
    |||||||| |||||||||||| ||||||| ||||||| |||||||||||||||   ||||  || || |||||| |||||||||| | ||||||||| ||    
T  23262254 tcacaagttacaccaacccaactgcatactgaagaggtggttgaccaattatttaccaacggattattggggtccgaagtaattaggaatttgaatgcta 23262353  T
Q  120 gaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaa 178  Q
    |||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||    
T  23262354 gaagagcagattgatctgtggtgatgttttttgtatttgcagcaaagcaagccacaaaa 23262412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 428 - 552
Target Start/End: Original strand, 25408497 - 25408619
Alignment:
Q  428 ccaagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataattgcatggaaaattccaatgcgtccaacaataattcattaca 527  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||||||    
T  25408497 ccaagttgcaatttaaaagtcagtcaacgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatatgtcc-acaataattcattaca 25408595  T
Q  528 atccgacgatgactattaagcattg 552  Q
    ||| || |||||||||  |||||||    
T  25408596 atctga-gatgactatcgagcattg 25408619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 482 - 581
Target Start/End: Original strand, 25331851 - 25331950
Alignment:
Q  482 ataattgcatggaaaattccaatgcgtccaacaataattcattacaatccgacgatgactattaagcattgattttctacctcttaattctcatcttcgc 581  Q
    ||||||||| ||||||||| |||  |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25331851 ataattgcaaggaaaattctaatatgtccaagaataattcattacaatccgacaatgactattaagcattgattttctacctcttaattctcatcttcgc 25331950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 430 - 547
Target Start/End: Original strand, 25380412 - 25380528
Alignment:
Q  430 aagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataattgcatggaaaattccaatgcgtccaacaataattcattacaat 529  Q
    ||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||||||| |||||||||| | |||| |||||| ||||||||||||||||    
T  25380412 aagttgcaatttacaagtcagtcaacgaaaaaagaacaagagtat-gcgtacataattacatggaaaatgctaatgggtccaagaataattcattacaat 25380510  T
Q  530 ccgacgatgactattaag 547  Q
    |  || ||||||||||||    
T  25380511 cttactatgactattaag 25380528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 433 - 500
Target Start/End: Original strand, 25711588 - 25711654
Alignment:
Q  433 ttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataattgcatggaaaattc 500  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  25711588 ttgcaatttaaaagtcagtcaatgaaaaagga-caaaagtatagcgtacataattgcatggaaaattc 25711654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 322 - 433
Target Start/End: Original strand, 25380267 - 25380376
Alignment:
Q  322 tattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcataccgagagtgttggtaggggcagtgcttca 421  Q
    |||||| |||||| || |||||||||| | |||||||| ||||||||| ||||| |||||||||||||||||  ||| | ||||| ||||| ||| ||||    
T  25380267 tattaaaaatattaacatttatttcacgccccactttttgtcattttgcgtaaaggtgagagattctcatac--agattattggtgggggctgtggttca 25380364  T
Q  422 aatcaaccaagt 433  Q
    ||||||||||||    
T  25380365 aatcaaccaagt 25380376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 322 - 413
Target Start/End: Original strand, 25486445 - 25486537
Alignment:
Q  322 tattaacaatattgacgtttatttcactctccacttttcgtca-ttttgtgtaaatgtgagagattctcataccgagagtgttggtaggggca 413  Q
    |||||| |||||| ||||||||||||| ||||||||||||||| ||||  |||| ||||||||||| |||||| ||||||||| || ||||||    
T  25486445 tattaaaaatattaacgtttatttcacgctccacttttcgtcatttttacgtaattgtgagagattgtcatacagagagtgttcgtgggggca 25486537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 336 - 429
Target Start/End: Original strand, 25636110 - 25636199
Alignment:
Q  336 acgtttatttcactctccacttttcgtcattttgtgtaaatgtgagagattctcataccgagagtgttggtaggggcagtgcttcaaatcaacc 429  Q
    ||||||||||||| | |||||||||||||||||| ||||| || ||||||||||||    ||||| ||||| ||||| ||| ||||||||||||    
T  25636110 acgtttatttcacgccccacttttcgtcattttgcgtaaaggttagagattctcat----agagtattggtgggggctgtggttcaaatcaacc 25636199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 535 - 582
Target Start/End: Original strand, 25711667 - 25711714
Alignment:
Q  535 gatgactattaagcattgattttctacctcttaattctcatcttcgcg 582  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  25711667 gatgattatcaagcattgattttctacctcttaattctcatcttcgcg 25711714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 435 - 526
Target Start/End: Original strand, 25486535 - 25486625
Alignment:
Q  435 gcaatttaaaagtcagtcaatgaaaaaagaacaaaagtata--gcgtacataattgcatggaaaattccaatgcgtccaacaataattcattac 526  Q
    |||||||||||||||||||| |||||||| |||| ||||||  ||||   |||||||||||||||||| |||| | |||| ||||| |||||||    
T  25486535 gcaatttaaaagtcagtcaaagaaaaaaggacaagagtatatagcgt---taattgcatggaaaattctaatgtggccaagaataactcattac 25486625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 430 - 526
Target Start/End: Original strand, 25688919 - 25689014
Alignment:
Q  430 aagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtatagcgtacataattgcatggaaaattccaatgcgtccaacaataattcattac 526  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||| | |||||||||| | |||||| | |  ||| |||| | |||||||||||||    
T  25688919 aagttgcaatttaaaagtcagtcaacgaaaaaagaacaagaatat-gtgtacataattacctggaaattgctgatgggtcctagaataattcattac 25689014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 428 - 463
Target Start/End: Original strand, 25501755 - 25501790
Alignment:
Q  428 ccaagttgcaatttaaaagtcagtcaatgaaaaaag 463  Q
    ||||||||||||||||||||||||||||||||||||    
T  25501755 ccaagttgcaatttaaaagtcagtcaatgaaaaaag 25501790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 381
Target Start/End: Original strand, 25688791 - 25688850
Alignment:
Q  322 tattaacaatattgacgtttatttcactctccacttttcgtcattttgtgtaaatgtgag 381  Q
    |||||| |||||| |||||||||||||   |||||| ||||||||||| |||||||||||    
T  25688791 tattaaaaatattaacgtttatttcacgacccacttctcgtcattttgcgtaaatgtgag 25688850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 122; Significance: 3e-62; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 25472 - 25307
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||    
T  25472 ctcatcacaagttacaccaatccaattgcatacggaagaggaggttgaccaattattagccaacacatcataagggtctgaagtaattagggatttgaat 25373  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaa 181  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||    
T  25372 gctagaagagcagattgatcagttgtgatgttttttgtatttgcagctaagcaagcaataaaacaa 25307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 41164 - 40941
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    |||||||||||||||||||||| || |||| || |||||||| || ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||    
T  41164 ctcatcacaagtgacaccaacc-aactgcacactgaagaggatgtggaccaattattagccaacatatcataggggtctgaagtaattaaagatttaaat 41066  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagc---nnnnnnngtaagagacaag 212  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| |          ||||||||||||    
T  41065 gctagaagagcagattgatcagttgtgatgtttttcgtattcgcagcaaagcaagtcacaaaacaatgcaatgataacaaaacaattagtaagagacaag 40966  T
Q  213 atgatagattcaccatttttcctta 237  Q
    || ||||||||||||||||| ||||    
T  40965 ataatagattcaccattttttctta 40941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 430 - 526
Target Start/End: Complemental strand, 40748 - 40651
Alignment:
Q  430 aagttgcaatttaaaagtcagtcaatgaaaaaagaacaaaagtat-agcgtacataattgcatggaaaattccaatgcgtccaacaataattcattac 526  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||  |||||||||||| |||| || || | |||| |||||| |||||||||||||    
T  40748 aagttgcaatttaaaagtcagtcaacgaaaaaagaacaagagtatgcgcgtacataattacatgaaatatgctaatgggtccaagaataattcattac 40651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 10332262 - 10332483
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    ||||||||||   |||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||||  |||||||||    
T  10332262 ctcatcacaaacaacaccaacccaattgcataccgatgaggaggttgaccaattattagtcagcatatcataggggtctgaagtaattagtgatttgaat 10332361  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgcagctaagcaagccacaaaacaatgcaatgatagcnnnnnnngtaagagacaagatg 215  Q
    | |||||| ||||||||||| ||||||||||||| || ||| | |||||||||||||| |||||||||||||| ||||       ||||||||  ||||     
T  10332362 gctagaagtgcagattgatctgttgtgatgttttctgaatttgaagctaagcaagccataaaacaatgcaatggtagcaaaaaaagtaagagatgagata 10332461  T
Q  216 atagattcaccatttttcctta 237  Q
    ||||||||||||||||||||||    
T  10332462 atagattcaccatttttcctta 10332483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 433
Target Start/End: Original strand, 10332544 - 10332613
Alignment:
Q  364 attttgtgtaaatgtgagagattctcataccgagagtgttggtaggggc--agtgcttcaaatcaaccaagt 433  Q
    |||||||||||||||||||||||| |||||  ||||||||||| |||||   ||| ||||||||||||||||    
T  10332544 attttgtgtaaatgtgagagattcacatac--agagtgttggtgggggctaggtggttcaaatcaaccaagt 10332613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 602 - 631
Target Start/End: Complemental strand, 4946376 - 4946347
Alignment:
Q  602 tgtactagtgtaacgccccgtgccaagcac 631  Q
    ||||||||||||||||||||||||||||||    
T  4946376 tgtactagtgtaacgccccgtgccaagcac 4946347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 634
Target Start/End: Original strand, 36315461 - 36315498
Alignment:
Q  597 tgttatgtactagtgtaacgccccgtgccaagcacaga 634  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  36315461 tgttatttactagtgtaatgccccgtgccaagcacaga 36315498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 634
Target Start/End: Original strand, 36329670 - 36329707
Alignment:
Q  597 tgttatgtactagtgtaacgccccgtgccaagcacaga 634  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  36329670 tgttatttactagtgtaatgccccgtgccaagcacaga 36329707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 23394235 - 23394063
Alignment:
Q  16 ctcatcacaagtgacaccaacccaattgcatacagaagaggaggttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaat 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||| | ||||||||||    
T  23394235 ctcatcacaagtgacaccaacccaactgcatacagaagaggaggttgaccaattattagctaacatatcattggggtctgaagtaatgagggatttgaat 23394136  T
Q  116 gatagaagagcagattgatcagttgtgatgttttttgtattcgc---agctaagcaagccacaaaacaatgca 185  Q
    |  ||||||||||||||||| || | ||||||||| | ||| ||   ||||||| ||||||| ||||||||||    
T  23394135 gcgagaagagcagattgatctgtggagatgtttttggcattggcatgagctaagtaagccacgaaacaatgca 23394063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 631
Target Start/End: Complemental strand, 42438873 - 42438839
Alignment:
Q  597 tgttatgtactagtgtaacgccccgtgccaagcac 631  Q
    |||||| ||||||||||||||||||||||||||||    
T  42438873 tgttatatactagtgtaacgccccgtgccaagcac 42438839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 633
Target Start/End: Complemental strand, 24780724 - 24780695
Alignment:
Q  604 tactagtgtaacgccccgtgccaagcacag 633  Q
    ||||||||||||||||||||||||||||||    
T  24780724 tactagtgtaacgccccgtgccaagcacag 24780695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 4445 - 4567
Alignment:
Q  59 gttgaccaattattagacaacatatcataggggtctgaagtaattaaggatttgaatgatagaagagcagattgatcagttgtgatgttttttgtattcg 158  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  4445 gttgaccaattattagccaacacatcataagggtctgaagtaattagggatttgaatgctagaagagcagattgatcagttgtgatgttttttgtatttg 4544  T
Q  159 cagctaagcaagccacaaaacaa 181  Q
    ||||||||||||| | |||||||    
T  4545 cagctaagcaagcaataaaacaa 4567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 490 - 599
Target Start/End: Complemental strand, 40025796 - 40025686
Alignment:
Q  490 atggaaaattccaatgcgtccaacaataattcattacaatccgacga-tgactattaagcattgattttctacctcttaattctcatcttcgcgcattca 588  Q
    ||||||||| | |||| |||||| || ||||| |||||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||| ||||||     
T  40025796 atggaaaatgctaatgtgtccaaaaacaattccttacaatctgacaaatgactattaagcattgattttcaacctcttaattctcatcttcgtgcattct 40025697  T
Q  589 cgttgttatgt 599  Q
     ||||||||||    
T  40025696 tgttgttatgt 40025686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 434 - 464
Target Start/End: Original strand, 30932676 - 30932706
Alignment:
Q  434 tgcaatttaaaagtcagtcaatgaaaaaaga 464  Q
    |||||||||||||||||||||||||||||||    
T  30932676 tgcaatttaaaagtcagtcaatgaaaaaaga 30932706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 599
Target Start/End: Complemental strand, 40024377 - 40024335
Alignment:
Q  557 tctacctcttaattctcatcttcgcgcattcacgttgttatgt 599  Q
    |||||||||||||||||||||||| ||||||  ||||||||||    
T  40024377 tctacctcttaattctcatcttcgtgcattcttgttgttatgt 40024335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 603 - 631
Target Start/End: Original strand, 193873 - 193901
Alignment:
Q  603 gtactagtgtaacgccccgtgccaagcac 631  Q
    |||||||||||||||||||||||||||||    
T  193873 gtactagtgtaacgccccgtgccaagcac 193901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 603 - 631
Target Start/End: Complemental strand, 40835900 - 40835872
Alignment:
Q  603 gtactagtgtaacgccccgtgccaagcac 631  Q
    |||||||||||||||||||||||||||||    
T  40835900 gtactagtgtaacgccccgtgccaagcac 40835872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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