View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_20 (Length: 332)
Name: NF20420_low_20
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 25574193 - 25574498
Alignment:
| Q |
11 |
cataggaccatacgcacacactcttactctttttgaaggttcgtttcatcactctttttgctacactttcgctctgttgttgaatgttaatcaccgcatt |
110 |
Q |
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| T |
25574193 |
cataggaccaaacgcacacactcttactctttttgaaggttcgtttcatcactctttttgctacactttcgctctgttgttgaatgttaatcaccgcatt |
25574292 |
T |
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| Q |
111 |
caactaaacatgttcgatattttcatgccttgtttttagggtttatcctttcttactatttttattcatgcattttaacctgtcttctatcaaaattact |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
25574293 |
caactaaacatgttcgatattttcatgccttgtttttagggtttatcttttcttactatttttattcatgcattttaacctg--ttcgatcaaaattact |
25574390 |
T |
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| Q |
211 |
cttccnnnnnnngtcattataaaataaaacgaaaatatgttattaagttcgtctatgcatacatttttatattgtaaatgaaattactttcatgtttgtg |
310 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
25574391 |
cttccattttttgtcattatgaaataaaacgaaaatatgttattaagttcgtctatgcatacatttttatattttacatgaaattactttcatgtttgtg |
25574490 |
T |
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| Q |
311 |
gtagtact |
318 |
Q |
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|||||||| |
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| T |
25574491 |
gtagtact |
25574498 |
T |
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