View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_22 (Length: 318)
Name: NF20420_low_22
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 36170486 - 36170776
Alignment:
| Q |
13 |
taggaacgtaccgttacactcgtgagttcgagactcgccattttacgttggaagttccatgaaacaccatcaacgttaaatattccattaccaagaagat |
112 |
Q |
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| T |
36170486 |
taggaacgtaccgttacacttgtgagttcaagacttgccattttacgttgaaagttccatgaaacaccgtcaacgttaaatattccattaccaagaagat |
36170585 |
T |
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| Q |
113 |
caccaaggattgtagagaatggttttccttttgggtagttatcaaaacgggttttgagcatgtgttctatgttttgtgggttgcatgtgatggtgttgtt |
212 |
Q |
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| T |
36170586 |
caccaaggattgtagagaatggttttccttttgggtagttatcaaaacgggttttgagcatgtgttctatgttttgtgggttgcatgtgatggtgttgtt |
36170685 |
T |
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| Q |
213 |
gagcacatggatgtggatggttcctgttggtgaatttttgaggaggtgagtgtaccaatcactaaggtttataaactctttggcccaattc |
303 |
Q |
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| T |
36170686 |
gagcacatggatgtggatggttccagttggtgattttttgaggaggtgagtgtaccaatcactaaggtttataaactctttggcccaattc |
36170776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 37672032 - 37672138
Alignment:
| Q |
13 |
taggaacgtaccgttacactcgtgagttcgagactcgccattttacgttggaagttccatgaaacaccatcaacgttaaatattccattaccaagaagat |
112 |
Q |
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|||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
37672032 |
taggaacgtaccgttacacttgtgagttctaggcttgccattttacgttggaagttccatgaaacaccatcaacgttaaatattccatcatcaagaagat |
37672131 |
T |
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| Q |
113 |
caccaag |
119 |
Q |
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| T |
37672132 |
caccaag |
37672138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 37672230 - 37672139
Alignment:
| Q |
119 |
ggattgtagagaat----ggttttccttttgggtagttatcaaaacgggttttgagcatgtgttctatgttttgtgggttgcatgtgatggt |
206 |
Q |
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| T |
37672230 |
ggattgtagagaatggttggttttccttttggattgttatccaaacaggttttgagcatgtgttctatgttttgtgggttgcatgtgatggt |
37672139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 19931897 - 19931851
Alignment:
| Q |
103 |
ccaagaagatcaccaaggattgtagagaatggttttccttttgggta |
149 |
Q |
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| T |
19931897 |
ccaagaagatcaccaaggattgtagagaattgtttacctttagggta |
19931851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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