View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20420_low_24 (Length: 310)
Name: NF20420_low_24
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 3703232 - 3702940
Alignment:
| Q |
17 |
ataatgaaccaatggaaatatcgattctgtaaaagaagtgcaagcatgactagccagaagtccttcaagtagac--tgaatgcatatgcacggatagtaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3703232 |
ataatgaaccaatggaaatatcgattctgtaaaagaagtgcaagcatgactagccagaagtctttcaagtagacaatgaatgcatatgcacggatagtaa |
3703133 |
T |
|
| Q |
115 |
aaccagccggattttatttgaaatgaaggaaatgttctaatttccacacagcaaaatttgataaataagaagctatacatcgaaaggtacacttgtcata |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3703132 |
aaccagccggagtttatttgaaatgaaggaaatgttctaatttccacacagaaaaatttgataaataagaagctatacatcgaaaggtacacttgtcata |
3703033 |
T |
|
| Q |
215 |
taatttaacaggagactgtggtcttgactcttgaatatccaagatccttcttaattatgtttgctattcactttttccagcctttgcttctcc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
3703032 |
taatttaacaggagactgtggtcttgactcttgaatatccaagatccttcttaattatgtttgctattcactttttccagcttttggttctcc |
3702940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 3706584 - 3706292
Alignment:
| Q |
17 |
ataatgaaccaatggaaatatcgattctgtaaaagaagtgcaagcatgactagccagaagtccttcaagtagac--tgaatgcatatgcacggatagtaa |
114 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3706584 |
ataacgaaccaatggaaatatcgat-ctgtaaaagaagtgcaagcatgactagccagaagtctttcaagtagacaatgaatgcatatgcacggatagtaa |
3706486 |
T |
|
| Q |
115 |
aaccagccggattttatttgaaatgaaggaaatgttctaatttccacacagcaaaatttgataaa-taagaagctatacatcgaaaggtacacttgtcat |
213 |
Q |
| |
|
|||||| | || |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
3706485 |
aaccagtcagagtttatttgaaatgaaggaaatgttctaatttccacaaagcaaaatttgataaattaagaagctatacgtcgaaaggtacacttgtcat |
3706386 |
T |
|
| Q |
214 |
ataatttaacaggagactgtgg-------tcttgactcttgaatatccaagatccttcttaattatgtttgctattcactttttccagcctttg |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| || ||| | ||| |||||||||||||||||| |||| |
|
|
| T |
3706385 |
gtaatttaacaggagactgtggtcttgactcttgactcttgaatatccaagatccttattgattctattttctattcactttttccagcttttg |
3706292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 3714489 - 3714282
Alignment:
| Q |
20 |
atgaaccaatggaaatatcgattctgtaaaagaagtgcaagcatgactagccagaagtccttcaagtagac--tgaatgcatatgcacggatagtaaaac |
117 |
Q |
| |
|
|||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||| | |||||||| ||||||||||||||| ||||||||| | |
|
|
| T |
3714489 |
atgaaccaatagaaatatagattctataaaagaagtgcaagcgtgactagccagaagccagaaaagtagacaatgaatgcatatgcacagatagtaaacc |
3714390 |
T |
|
| Q |
118 |
cagccggattttatttgaaatgaaggaaatgttctaatttccacacagcaaaatttgataaa-taagaagctatacatcgaaaggtacacttgtcatata |
216 |
Q |
| |
|
| || | | ||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3714389 |
ctgcagaagtttatttgaaatgaaggaaatgtcctaatttccacacgacaaaatttgataaattaagaagctatacatcgaaaggtacacttgtcatata |
3714290 |
T |
|
| Q |
217 |
atttaaca |
224 |
Q |
| |
|
|| ||||| |
|
|
| T |
3714289 |
atataaca |
3714282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University