View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_25 (Length: 303)
Name: NF20420_low_25
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 17001649 - 17001942
Alignment:
| Q |
1 |
actatgagcagaacctgcacaaactatattgaagctcatcttatcttatgattaaaaaccgagaacaatgcgtaattgcaacaattaagccttgttgttt |
100 |
Q |
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| T |
17001649 |
actatgagcagaacctgcacaaaatatattgaagctcatcttatcttatgattaaaaaccgagaacaatgcgtaatcgcaacaataaagccctgttgttt |
17001748 |
T |
|
| Q |
101 |
aaaacactcaatacaaagttattcttagacctcttgtcagggcctccaggggtcattaaacaaataaaaaataaaatacatcatgaaaggcatttacata |
200 |
Q |
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| T |
17001749 |
aaaacactcaatacaaagttattcttagacctcttgtcagggcctccagaggtcattaaacaaataaaaaatcaaatacatcatgaaaggcatttacata |
17001848 |
T |
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| Q |
201 |
agatatgaactagcaacattcatactcctattctcataccttgcatcattagatacaaacttagcagaataacaaatttgacataaagaataat |
294 |
Q |
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| T |
17001849 |
agatatgaactagcaacattcatactcctattctcataacttgcatcatcagatacaaacttagcagaataacaaatttgacataaagaataat |
17001942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 1186709 - 1187002
Alignment:
| Q |
1 |
actatgagcagaacctgcacaaactatattgaagctcatcttatcttatgattaaaaaccgagaacaatgcgtaattgcaacaattaagccttgttgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
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| T |
1186709 |
actatgagcagaacctgcacaaactatattgaagctcatcttatcttatgattaaaaaccgagaacaatgcgtaatcgcaacaataaagccttgttgatt |
1186808 |
T |
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| Q |
101 |
aaaacactcaatacaaagttattcttagacctcttgtcagggcctccaggggtcattaaacaaataaaaaataaaatacatcatgaaaggcatttacata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
1186809 |
aaaacactcaatacaaagttattcttagacctcttgtcagggcctccagaggtcattaaacaaataaaaaatcaaatacatcatgaaaggcatttacgaa |
1186908 |
T |
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| Q |
201 |
agatatgaactagcaacattcatactcctattctcataccttgcatcattagatacaaacttagcagaataacaaatttgacataaagaataat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1186909 |
agatatgaactagcaacattcatactcctattctcataacttgcatcatcagatacaaacttagcagaataacaaatttgacataaagaataat |
1187002 |
T |
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