View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_28 (Length: 244)
Name: NF20420_low_28
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 39483330 - 39483560
Alignment:
| Q |
13 |
aataatacattcattggtctagcatgaagaaccattgtcctcgatgtttcagtgtctacacatcctccctgaaactacaccaaataacaaacaaaaaatt |
112 |
Q |
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| T |
39483330 |
aataatacattcacttgtctagcatgaggaaccattgttctcaatgtttcagtgtctacacatcctccctgaaactacaccaaataacaaacaaaaagtt |
39483429 |
T |
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| Q |
113 |
actaatactttaaattgcttacaaaaacagccatcatggattaacattnnnnnnnnnncatcaataaaaacaaacactaatttagcgtgtccttgtgtct |
212 |
Q |
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| T |
39483430 |
actaatactttaaattgcttacaaaaacagccatcatggattaacatt-aaaaaaaaacatcaataaaaacaaacactaatttagcgtgtccttgtgtct |
39483528 |
T |
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| Q |
213 |
ctaagaagataacacaatttctcaaaccatta |
244 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
39483529 |
ctaagaacataacacaatttctcaaaccatta |
39483560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 38995432 - 38995618
Alignment:
| Q |
56 |
atgtttcagtgtctacacatcctccctgaaactacaccaaataacaaacaaaaaattactaatactttaaattgcttacaaaaacagccatcatggatta |
155 |
Q |
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||||||| ||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||| |
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| T |
38995432 |
atgtttcggtgtctacatatcctccctaaaaccacaccaaataacaaacaaaaaattactaacagtttaaattgcttacaaaaacagccatc-ttgatta |
38995530 |
T |
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| Q |
156 |
acatt---nnnnnnnnnncatcaataaaaacaaacactaatttagcgtgtccttgtgtctctaagaagataacacaatttctcaaacc |
240 |
Q |
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| T |
38995531 |
tcattaaaaaaaaaaaaacatcaataaaaacaaacattaatgtagcgtgtccttgtgtctctaagaacacaacataatttctcaaacc |
38995618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 21924700 - 21924641
Alignment:
| Q |
185 |
aacactaatttagcgtgtccttgtgtctctaagaagataacacaatttctcaaaccatta |
244 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21924700 |
aacactaatttaacgtgtccttgtgtctctaagaacgcaacacaatttctcaaaccatta |
21924641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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