View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_33 (Length: 227)
Name: NF20420_low_33
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 9546749 - 9546947
Alignment:
| Q |
13 |
agcacagataacacgtattagataggacacggtcacaaatacaatcacaagaaagaataaacaatattttataacaaaattaattttgtttttccaagat |
112 |
Q |
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| T |
9546749 |
agcacaaataacacgtattagattggacacggtcacaaatacaatcacaagaaagaataaacaatattttataacaaaattaattttgtttttttaagat |
9546848 |
T |
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| Q |
113 |
gaacaaaataattgttacaaggcaaacataagaggacaatatcat---atacatcaaaaaacatcttgacaggacatgaaataaagacaaattgcatac |
208 |
Q |
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| T |
9546849 |
gaacaaagtaattgttacaaggcaaacataagaggacaatatcatatcatacatcaaaaaacatcttgaaaggacatgaaataaagacaaattgcatac |
9546947 |
T |
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