View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20420_low_35 (Length: 218)
Name: NF20420_low_35
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 28216246 - 28216069
Alignment:
| Q |
13 |
ttttagttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28216246 |
ttttatttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt |
28216147 |
T |
|
| Q |
113 |
ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatcttacggtta |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28216146 |
ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatctcacggtta |
28216069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 218
Target Start/End: Complemental strand, 28216048 - 28216017
Alignment:
| Q |
187 |
gttataaaaagaaaatgaggagattcttcatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28216048 |
gttataaaaagaaaatgaggagattcttcatc |
28216017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 21453239 - 21453277
Alignment:
| Q |
19 |
ttttcattaggtagctcatccttatgatgagtgagtagt |
57 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
21453239 |
ttttcattgggtagctcatccttgtgatgagtgagtagt |
21453277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 26774263 - 26774304
Alignment:
| Q |
19 |
ttttcattaggtagctcatccttatgatgagtgagtagttcc |
60 |
Q |
| |
|
|||||| || |||| ||||||||||||||||||||||||||| |
|
|
| T |
26774263 |
ttttcactacgtagttcatccttatgatgagtgagtagttcc |
26774304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University