View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_36 (Length: 216)
Name: NF20420_low_36
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 47802778 - 47802690
Alignment:
| Q |
1 |
gcttaccacaaacccaagattctacagtatcaaaaaaggaatcatcctttccaacacaatcaggatgataagcttttccacagttcctg |
89 |
Q |
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| T |
47802778 |
gcttaccacaaacccaagattctacagtatcaaaaaaggaatcatcctttccaacacaatcagaatgataagcttttccacagttcctg |
47802690 |
T |
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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 47802612 - 47802575
Alignment:
| Q |
179 |
gagttactcatgatcacagataacaagttgtccaccat |
216 |
Q |
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| T |
47802612 |
gagttactcatgatcacagataacaagttgtccaccat |
47802575 |
T |
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