View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20420_low_4 (Length: 597)

Name: NF20420_low_4
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20420_low_4
NF20420_low_4
[»] chr7 (12 HSPs)
chr7 (12-527)||(39622495-39623010)
chr7 (208-348)||(39589919-39590059)
chr7 (207-378)||(39539043-39539214)
chr7 (218-378)||(39348294-39348454)
chr7 (252-378)||(39565337-39565463)
chr7 (218-378)||(39365096-39365256)
chr7 (218-347)||(39548424-39548553)
chr7 (525-578)||(39626634-39626687)
chr7 (207-363)||(39575681-39575837)
chr7 (218-378)||(39336994-39337154)
chr7 (460-527)||(39575932-39575999)
chr7 (12-58)||(39589727-39589773)


Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 12 - 527
Target Start/End: Original strand, 39622495 - 39623010
Alignment:
Q  12 tcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctctcttcccataatgtttattttccgttacagattttttcttcctggatagcaatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622495 tcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctctcttcccataatgtttattttccgttacagattttttcttcctggatagcaatt 39622594  T
Q  112 gaacggattcaacgacctgatgttctttaagtgctgcataatccatttctaatattagtacatactaagcttttatttattttgctaaggttggtgaaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622595 gaacggattcaacgacctgatgttctttaagtgctgcataatccatttctaatattagtacatactaagcttttatttattttgctaaggttggtgaaac 39622694  T
Q  212 ttacggttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttggactgag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622695 ttacggttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttggactgag 39622794  T
Q  312 taaagaatccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttcagaaaaacacaaagatatccagacaagtgattaa 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622795 taaagaatccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttcagaaaaacacaaagatatccagacaagtgattaa 39622894  T
Q  412 tttgtgtgataaagaggcacataaatgaagatattgatcagtgaataacatacatgtctccatgtcttcccttggaactcattattcaacaaggcattct 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622895 tttgtgtgataaagaggcacataaatgaagatattgatcagtgaataacatacatgtctccatgtcttcccttggaactcattattcaacaaggcattct 39622994  T
Q  512 gtccatacattgcagg 527  Q
    ||||||||||||||||    
T  39622995 gtccatacattgcagg 39623010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 208 - 348
Target Start/End: Original strand, 39589919 - 39590059
Alignment:
Q  208 aaacttacggttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttggac 307  Q
    ||||| |||||||||| |||  |||||||| | |||||||| | ||||||||||||||||||||||||  || ||||||||||||||||||||||  |||    
T  39589919 aaactcacggttcaagtaagcgagagcaagtaggtaaccaaagttgaatagtaatgtgtatccaatcattgctccaaaacctatccaataccagtaagac 39590018  T
Q  308 tgagtaaagaatccacgagatttcaaaacttgaactcctag 348  Q
    ||||||||||| || ||||||||||||| || |||||||||    
T  39590019 tgagtaaagaaccctcgagatttcaaaatttcaactcctag 39590059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 207 - 378
Target Start/End: Original strand, 39539043 - 39539214
Alignment:
Q  207 gaaacttacggttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttgga 306  Q
    |||||||||| ||||||||||| |||||||| || || |||| | |||| | |||||| ||||||||||| ||||||| ||||||||| |||||||  |     
T  39539043 gaaacttacgattcaagaaagtgagagcaaggatatatccaaagttgaagattaatgtatatccaatcaaagcaccaacacctatccagtaccagtatgg 39539142  T
Q  307 ctgagtaaagaatccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttca 378  Q
    || | ||||||||||  ||||||||||||||| ||||||||  ||||| |||||||| || | |||||||||    
T  39539143 ctcactaaagaatccgtgagatttcaaaacttcaactcctatcggttccgttgagttagggagaacctttca 39539214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 218 - 378
Target Start/End: Complemental strand, 39348454 - 39348294
Alignment:
Q  218 ttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttggactgagtaaaga 317  Q
    ||||||||||| |||||||| || || |||| | |||| |||||||| ||||||||||| ||||||| || |||||||||||| |  | || ||||||||    
T  39348454 ttcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacatatccaataccaatatgtctcagtaaaga 39348355  T
Q  318 atccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttca 378  Q
    | |  |||||||||||||||| ||||||||||| ||| |||||||| || | |||||||||    
T  39348354 aactgcgagatttcaaaacttcaactcctagtgattcggttgagttaggaagaacctttca 39348294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 252 - 378
Target Start/End: Original strand, 39565337 - 39565463
Alignment:
Q  252 tgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttggactgagtaaagaatccacgagatttcaaaacttgaactcctagtgg 351  Q
    |||| |||||||| ||||||||||| ||||||| ||||||||| |||||||  |||| ||| |||||||| |||||||||||||||| ||||||||| ||    
T  39565337 tgaaaagtaatgtatatccaatcaaagcaccaacacctatccagtaccagtatgactcagtgaagaatccgcgagatttcaaaacttcaactcctagcgg 39565436  T
Q  352 ttctgttgagttcggtacaacctttca 378  Q
     || |||||||| || | |||||||||    
T  39565437 ctcagttgagttaggcagaacctttca 39565463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 218 - 378
Target Start/End: Complemental strand, 39365256 - 39365096
Alignment:
Q  218 ttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttggactgagtaaaga 317  Q
    ||||||||||| |||||||| || || |||| | |||| |||||||| ||||||||||| ||||||| || |||||||||||| |  | || ||||||||    
T  39365256 ttcaagaaagtgagagcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacatatccaataccaatatgtctcagtaaaga 39365157  T
Q  318 atccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttca 378  Q
    | |  |||||||||||||||| ||||||||||| | | |||||||| || | |||||||||    
T  39365156 aactgcgagatttcaaaacttcaactcctagtgatccggttgagttaggaagaacctttca 39365096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 218 - 347
Target Start/End: Original strand, 39548424 - 39548553
Alignment:
Q  218 ttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttggactgagtaaaga 317  Q
    ||||||||||| || ||||| || || |||| | |||| |||||||| ||||||||||| ||||||| ||||||||| |||||||  |||| ||| |||     
T  39548424 ttcaagaaagtgagggcaaggatatagccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacctatccagtaccagtatgactcagtgaagt 39548523  T
Q  318 atccacgagatttcaaaacttgaactccta 347  Q
    |||| |||||||||||||||| ||||||||    
T  39548524 atccgcgagatttcaaaacttcaactccta 39548553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 525 - 578
Target Start/End: Original strand, 39626634 - 39626687
Alignment:
Q  525 aggatgctctctgcaaggcatcatcacactttcatatactttcatcgtactgat 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39626634 aggatgctctctgcaaggcatcatcacactttcatatactttcatcgtactgat 39626687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 207 - 363
Target Start/End: Original strand, 39575681 - 39575837
Alignment:
Q  207 gaaacttacggttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttgga 306  Q
    |||||| ||| || ||| |||| ||||||||||||||||| | | |||| |||||||| ||||| | ||| ||  |||||| ||||||||||||||  ||    
T  39575681 gaaactcacgattgaagtaagttagagcaagaatgtaacccaagttgaacagtaatgtatatccgagcaatgccgcaaaacatatccaataccagtatga 39575780  T
Q  307 ctgagtaaagaatccacgagatttcaaaacttgaactcctagtggttctgttgagtt 363  Q
    ||| |||||||| |||||||||| |||||| | ||||||||| ||||  ||||||||    
T  39575781 ctgtgtaaagaacccacgagattccaaaacatcaactcctagcggtttagttgagtt 39575837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 218 - 378
Target Start/End: Complemental strand, 39337154 - 39336994
Alignment:
Q  218 ttcaagaaagtaagagcaagaatgtaaccaatgatgaatagtaatgtgtatccaatcaaggcaccaaaacctatccaataccagttggactgagtaaaga 317  Q
    ||||||||||| || ||||| || || |||| | |||| |||||||| ||||||||||| ||||||| || |||||| ||||| |  | || ||||||||    
T  39337154 ttcaagaaagtgagggcaaggatatatccaaagttgaaaagtaatgtatatccaatcaaagcaccaacacatatccagtaccaatatgtctcagtaaaga 39337055  T
Q  318 atccacgagatttcaaaacttgaactcctagtggttctgttgagttcggtacaacctttca 378  Q
    | |  |||||||||||||||| |||||| |||| ||| |||||||| || | |||||||||    
T  39337054 aactgcgagatttcaaaacttcaactccaagtgattcggttgagttaggaagaacctttca 39336994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 527
Target Start/End: Original strand, 39575932 - 39575999
Alignment:
Q  460 catacatgtctccatgtcttcccttggaactcattattcaacaaggcattctgtccatacattgcagg 527  Q
    |||||||||||||||||||| ||| ||||||| |||||||  ||| |||||||| |||||||| ||||    
T  39575932 catacatgtctccatgtctttcctaggaactcgttattcactaagccattctgtgcatacattacagg 39575999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 39589727 - 39589773
Alignment:
Q  12 tcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcctct 58  Q
    ||||||||||||| ||| ||||||||||||| ||||| |||||||||    
T  39589727 tcatcaaaggtgacacaatgtggttcaaaaggaagaaccattcctct 39589773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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